Basic Information
Locus ID:
Ag5G01184
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
armadillo beta-catenin repeat family protein F-box family protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 81930933 | 81941798 | + | Ag5G01184 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.61 | 69,629.46 Da | 36.44 | 102.40 | 0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12937 | F-box-like | 18 | 62 | 1.8E-6 | IPR001810 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 317 | 345 | 5.4E-7 | IPR000225 |
| SUPERFAMILY | SSF48371 | ARM repeat | 248 | 454 | 2.78E-26 | IPR016024 |
| SUPERFAMILY | SSF52047 | RNI-like | 58 | 167 | 1.37E-5 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 16 | 67 | 5.89E-11 | IPR036047 |
| Gene3D | G3DSA:1.25.10.10 | - | 373 | 615 | 2.4E-12 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 222 | 310 | 7.5E-10 | IPR011989 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 12 | 186 | 1.2E-19 | IPR032675 |
| Gene3D | G3DSA:1.25.10.10 | - | 311 | 372 | 7.2E-10 | IPR011989 |
| SMART | SM00185 | arm_5 | 308 | 346 | 4.8 | IPR000225 |
| SMART | SM00185 | arm_5 | 394 | 434 | 52.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 175 | 215 | 7.8 | IPR000225 |
| SMART | SM00185 | arm_5 | 216 | 261 | 350.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 262 | 301 | 2.3 | IPR000225 |
| SMART | SM00185 | arm_5 | 347 | 393 | 24.0 | IPR000225 |
| SMART | SM00256 | fbox_2 | 19 | 59 | 3.5E-6 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 13 | 59 | 10.504256 | IPR001810 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 186 | 222 | 9.1524 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 317 | 359 | 13.2824 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 225 | 274 | 9.7824 | IPR000225 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G44900.1 | ARABIDILLO-1. ARABIDILLO-1 and its homolog, ARABIDILLO -2, are unique among Arabidopsis Arm-repeat proteins in having an F-box motif and fall into a phylogenetically distinct subgroup from other plant Arm-repeat proteins Similar to arm repeat protein in rice and armadillo/beta-catenin repeat family protein / F-box family protein in Dictyostelium. ARABIDILLO-1 promote lateral root development. Mutant plants form fewer lateral roots, while ARABIDILLO-1-overexpressing lines produce more lateral roots than wild-type seedlings. | 0 |
| RefSeq | XP_010473820.1 | PREDICTED: protein ARABIDILLO 2-like [Camelina sativa] | 0 |
| O22161 | Protein ARABIDILLO 1 OS=Arabidopsis thaliana OX=3702 GN=FBX5 PE=1 SV=1 | 0 | |
| TrEMBL | A0A161Y6J6 | F-box domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_025070 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 2.715897 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 2.485126 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 2.405907 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 2.586559 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 2.626953 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 2.781818 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 2.137858 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 1.478141 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 11.592925 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 13.461653 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 14.433265 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 11.988612 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 11.673393 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 10.865725 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 6.01266 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 6.387801 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 7.402776 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 7.613701 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 6.238059 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 5.695632 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 5.911207 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 11.502516 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 10.985659 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 10.153142 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 9.548294 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 8.924173 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 6.287499 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 7.272596 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 7.695724 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 2.873319 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 4.430638 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 2.984672 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 3.813577 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 4.279687 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 2.712926 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 2.309556 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 1.400426 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 1.39009 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 6.832711 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 5.077206 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 4.177343 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 6.037678 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 7.538401 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 12.687847 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 12.498869 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 4.655793 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 11.688034 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 8.388053 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 11.394616 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 12.626747 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 6 | jg1772, jg26783, jg26784, jg29182, jg29716, jg29721 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_1300 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah023302 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg29178, Sbi_jg3400 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg6549 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00000173 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl11401, Sgl16777 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000014688, gene:ENSEOMG00000035750 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.1AG0007280, CQ.Regalona.r1.2BG0010720 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30001820, pistato.v30187980 |
| Apiaceae | Apium graveolens | 3 | Ag1G00135, Ag5G01184, Ag5G01185 |
| Arecaceae | Cocos nucifera | 2 | COCNU_07G005060, COCNU_10G003570 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103704656, gene-LOC103713583 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_10.810.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri14G24367, Ftri7G10964 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT2G44900.1, AT3G60350.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10001300m.g.v1.0, Thhalv10005776m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 4 | Sp4g26970.v2.2, Sp5g02870.v2.2, Sp5g02880.v2.2 ... |
| Brassicaceae | Brassica nigra | 8 | BniB01g001790.2N, BniB05g044350.2N, BniB06g062610.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G1069 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G1085 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno09g02140, gene.Cymno11g09100 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g01670 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-2676 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.77 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00017049, Pov_00017050 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb0G37100, Lb5G28093 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.2896, BH01.3234, CH01.3466 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0116820, gene-QOZ80_2BG0170540 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.1HG0057680.1, HORVU.MOREX.r3.4HG0416450.1 |
| Poaceae | Lolium multiflorum | 4 | gene-QYE76_012700, gene-QYE76_071567, gene-QYE76_071568 ... |
| Poaceae | Oryza coarctata | 2 | Oco19G010330, Oco20G010150 |
| Poaceae | Oryza sativa | 1 | LOC_Os10g41360.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G285000 |
| Poaceae | Puccinellia tenuiflora | 6 | Pt_Chr0101058, Pt_Chr0101167, Pt_Chr0503221, Pt_Chr0503266 ... |
| Poaceae | Sporobolus alterniflorus | 2 | Chr09G005060, Chr13G019750 |
| Poaceae | Thinopyrum elongatum | 2 | Tel1E01G369100, Tel4E01G609100 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC1AG032880, gene_TRIDC1BG038290 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS1A02G217900.1, TraesCS1B02G231300.1 ... |
| Poaceae | Zea mays | 4 | Zm00001eb023660_P001, Zm00001eb269460_P001 ... |
| Poaceae | Zoysia japonica | 4 | nbis-gene-36370, nbis-gene-38014, nbis-gene-38015 ... |
| Poaceae | Zoysia macrostachya | 2 | Zma_g12920, Zma_g15691 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG04.1003 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc08g01850 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_11_RagTag.1237, evm.TU.Scaffold_4_RagTag.253 ... |
| Rhizophoraceae | Carallia pectinifolia | 5 | nbisL1-mrna-12427, nbisL1-mrna-12539, nbisL1-mrna-29097 ... |
| Rhizophoraceae | Ceriops tagal | 3 | nbisL1-mrna-10521, nbisL1-mrna-18627, nbisL1-mrna-6877 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-12807, nbisL1-mrna-15182, nbisL1-mrna-2042 |
| Rhizophoraceae | Kandelia candel | 3 | evm.TU.utg000008l.161, evm.TU.utg000010l.278 ... |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00001180, Maker00003741 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-2438, nbisL1-mrna-9469 |
| Rhizophoraceae | Rhizophora mangle | 3 | nbisL1-mrna-18860, nbisL1-mrna-22778, nbisL1-mrna-6164 |
| Salicaceae | Populus euphratica | 2 | populus_peu03806, populus_peu31886 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132645782 |
| Solanaceae | Solanum chilense | 1 | SOLCI002632500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107005143 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_3240 |
| Tamaricaceae | Tamarix chinensis | 2 | TC02G0052, TC10G2244 |
| Zosteraceae | Zostera marina | 2 | Zosma03g36140.v3.1, Zosma03g36200.v3.1 |