Basic Information
Locus ID:
Ag5G01122
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Beach domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 68614515 | 68655839 | + | Ag5G01122 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.52 | 320,689.03 Da | 47.29 | 90.23 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01201 | PH_BEACH | 2090 | 2199 | 2.28947E-28 | IPR023362 |
| CDD | cd06071 | Beach | 2223 | 2500 | 2.44652E-145 | IPR000409 |
| Pfam | PF14844 | PH domain associated with Beige/BEACH | 2099 | 2196 | 1.6E-26 | IPR023362 |
| Pfam | PF00400 | WD domain, G-beta repeat | 2656 | 2686 | 5.2E-7 | IPR001680 |
| Pfam | PF02138 | Beige/BEACH domain | 2224 | 2499 | 1.3E-113 | IPR000409 |
| Pfam | PF15787 | Domain of unknown function (DUF4704) | 660 | 939 | 1.4E-53 | IPR031570 |
| SUPERFAMILY | SSF50729 | PH domain-like | 2090 | 2196 | 3.14E-22 | - |
| SUPERFAMILY | SSF81837 | BEACH domain | 2209 | 2500 | 4.45E-122 | IPR036372 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 2623 | 2911 | 2.75E-28 | IPR036322 |
| SUPERFAMILY | SSF49899 | Concanavalin A-like lectins/glucanases | 364 | 590 | 8.59E-7 | IPR013320 |
| Gene3D | G3DSA:1.10.1540.10 | BEACH domain | 2212 | 2500 | 3.3E-134 | IPR036372 |
| Gene3D | G3DSA:2.30.29.30 | - | 2090 | 2195 | 3.4E-30 | IPR011993 |
| Gene3D | G3DSA:2.130.10.10 | - | 2710 | 2919 | 5.2E-12 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 2604 | 2708 | 2.5E-11 | IPR015943 |
| SMART | SM00320 | WD40_4 | 2648 | 2687 | 3.4E-8 | IPR001680 |
| SMART | SM01026 | Beach_2 | 2223 | 2500 | 1.3E-192 | IPR000409 |
| SMART | SM00320 | WD40_4 | 2872 | 2912 | 170.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 2730 | 2769 | 0.023 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 2655 | 2689 | 11.998316 | - |
| ProSiteProfiles | PS50197 | BEACH domain profile. | 2211 | 2500 | 115.727585 | IPR000409 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 2655 | 2696 | 15.654854 | IPR001680 |
| ProSiteProfiles | PS51783 | BEACH-type PH domain profile. | 2087 | 2196 | 33.31757 | IPR023362 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 117 | 155 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 106 | 155 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G45540.1 | WD-40 repeat family protein / beige-related. | 0 |
| RefSeq | XP_017218200.1 | PREDICTED: BEACH domain-containing protein C2 isoform X1 [Daucus carota subsp. sativus] | 0 |
| F4IG73 | BEACH domain-containing protein C2 OS=Arabidopsis thaliana OX=3702 GN=BCHC2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A164TVX7 | DUF4704 domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_025120 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 13.685205 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 11.027387 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 9.765152 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 11.618176 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 13.256916 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 7.700664 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 7.549895 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 4.518428 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 38.564594 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 34.537312 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 39.41486 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 33.303276 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 36.850803 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 27.357191 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 14.699866 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 20.357313 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 16.570644 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 27.562609 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 14.694179 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 21.159315 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 25.38258 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 15.772943 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 18.314329 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 16.03883 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 15.165868 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 30.004303 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 20.970657 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 17.5214 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 26.844328 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0.589643 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 1.096203 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0.959665 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 2.981185 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 3.372243 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 2.855318 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 1.505475 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0.274097 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.636246 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 19.922745 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 9.909016 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 3.580433 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 5.657711 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 8.035915 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 8.645318 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 7.649535 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 4.923295 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 13.090241 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 11.582239 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 12.381885 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 9.960771 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg1846, jg1847, jg1848, jg29278 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_1369 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah023141 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg4367, Sbi_jg49460 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg5780 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00000325 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl11229, Sgl11230, Sgl16624, Sgl16625 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000016088, gene:ENSEOMG00000032260 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1AG0005980, CQ.Regalona.r1.2BG0023740 |
| Apiaceae | Apium graveolens | 2 | Ag5G01122, Ag6G01646 |
| Arecaceae | Cocos nucifera | 3 | COCNU_07G011840, COCNU_10G008780, COCNU_10G008810 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103718064 |
| Asparagaceae | Asparagus officinalis | 4 | AsparagusV1_04.941.V1.1, AsparagusV1_07.1419.V1.1 ... |
| Asteraceae | Flaveria trinervia | 2 | Ftri15G02178, Ftri7G23688 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT2G45540.2, AT3G60920.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10001277m.g.v1.0, Thhalv10005733m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp4g27560.v2.2, Sp5g02330.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB06g004010.2N, BniB06g062260.2N, BniB08g075190.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G0463 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G0494 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno14g00810 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0165s00002.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g22740 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.218 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00040463 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb2G10536, Lb2G10543 |
| Poaceae | Echinochloa crus-galli | 5 | AH09.1873, BH07.2728, BH09.2042, CH07.2801, CH09.2184 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_2AG0140040, gene-QOZ80_4AG0307900 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0188960.1, HORVU.MOREX.r3.6HG0601780.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_024206, gene-QYE76_045451 |
| Poaceae | Oryza coarctata | 2 | Oco04G018210, Oco08G012370 |
| Poaceae | Oryza sativa | 3 | LOC_Os02g44380.2, LOC_Os04g46892.1, LOC_Os04g46894.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_04G221800, gene-BS78_06G185000 |
| Poaceae | Puccinellia tenuiflora | 5 | Pt_Chr0205946, Pt_Chr0206468, Pt_Chr0301732, Pt_Chr0502277 ... |
| Poaceae | Sporobolus alterniflorus | 5 | Chr09G024100, Chr0G020220, Chr15G007290, Chr23G006890 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G701000, Tel6E01G464300 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC2BG062500, gene_TRIDC6AG038120 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS2A02G410800.1, TraesCS2B02G429600.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb074430_P001, Zm00001eb249850_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-37298 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g14071, Zma_g20204 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG04.2375, evm.TU.LG19.824, evm.TU.LG24.823 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g05210 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_9_RagTag.378 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-21723 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-15720 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-7126, nbisL1-mrna-7127 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000003l.313 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00009920 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-6871 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-12712 |
| Salicaceae | Populus euphratica | 4 | populus_peu27817, populus_peu31759, populus_peu31760 ... |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132645621 |
| Solanaceae | Solanum chilense | 1 | SOLCI004363100 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107032398 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_822 |
| Tamaricaceae | Tamarix chinensis | 1 | TC03G2698 |
| Zosteraceae | Zostera marina | 1 | Zosma03g27140.v3.1 |