halophFGD

Basic Information

Locus ID: Ag5G01116

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Belongs to the glycosyltransferase 8 family

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr5	67523213	67527007	+	Ag5G01116

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.23	73,411.09 Da	36.56	83.45	-0.54

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd06429	GT8_like_1	328	624	3.17055E-126	-
Pfam	PF01501	Glycosyl transferase family 8	297	610	1.2E-95	IPR002495
SUPERFAMILY	SSF53448	Nucleotide-diphospho-sugar transferases	328	634	1.83E-69	IPR029044
Gene3D	G3DSA:3.90.550.10	Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A	330	629	7.8E-44	IPR029044
Coils	Coil	Coil	200	227	-	-

Gene Ontology

Molecular Function:

GO:0016757 (glycosyltransferase activity)

KEGG Pathway

KO Term:

K13648 (alpha-1,4-galacturonosyltransferase [EC:2.4.1.43])

Pathway:

ko00520 (Amino sugar and nucleotide sugar metabolism) map00520 (Amino sugar and nucleotide sugar metabolism)

Reaction:

R05191 (n UDP-D-galacturonate <=> n UDP + Pectin)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G61130.1	galacturonosyltransferase 1. Encodes a protein with putative galacturonosyltransferase activity.
RefSeq	XP_017219658.1	PREDICTED: polygalacturonate 4-alpha-galacturonosyltransferase-like [Daucus carota subsp. sativus]
Swiss-Prot	Q9LE59	Polygalacturonate 4-alpha-galacturonosyltransferase OS=Arabidopsis thaliana OX=3702 GN=GAUT1 PE=1 SV=1
TrEMBL	A0A164TW83	Hexosyltransferase OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_025131 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	24.971457	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	16.105429	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	15.202358	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	16.570604	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	16.316803	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	15.512994	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	12.250539	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	12.720817	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	32.39246	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	31.190268	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	37.263866	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	37.335377	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	31.139353	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	26.684319	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	24.791454	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	34.124619	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	32.766102	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	25.40321	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	22.25432	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	23.066439	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	19.290102	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	27.741905	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	35.13942	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	36.998245	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	31.032053	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	28.014278	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	27.164482	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	19.585737	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	27.620113	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	5.454818		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	7.660652		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	6.271778		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	9.136356		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	20.576681		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	10.82444		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	5.436181		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	4.032917		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	4.62647		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	22.379662	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	13.849411	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	8.525353	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	17.533142	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	20.671309	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	16.789806	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	16.648914	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	17.59108	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	21.535803	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	38.509796	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	35.385929	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	34.111523	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	5	jg11851, jg21753, jg24728, jg38531, jg5793
Aizoaceae	Mesembryanthemum crystallinum	2	gene_1376, gene_7383
Amaranthaceae	Atriplex hortensis	3	Ah009388, Ah017237, Ah023114
Amaranthaceae	Beta vulgaris	2	BVRB_8g184210, BVRB_9g212470
Amaranthaceae	Salicornia bigelovii	7	Sbi_jg10912, Sbi_jg10914, Sbi_jg25778, Sbi_jg4385 ... Sbi_jg47422, Sbi_jg49300, Sbi_jg9605
Amaranthaceae	Salicornia europaea	4	Seu_jg19038, Seu_jg21664, Seu_jg21665, Seu_jg5806
Amaranthaceae	Suaeda aralocaspica	3	GOSA_00000340, GOSA_00012461, GOSA_00018757
Amaranthaceae	Suaeda glauca	6	Sgl11211, Sgl16606, Sgl41771, Sgl46571, Sgl55604, Sgl60818
Amaranthaceae	Chenopodium album	9	gene:ENSEOMG00000008981, gene:ENSEOMG00000016275 ... gene:ENSEOMG00000016387, gene:ENSEOMG00000030257, gene:ENSEOMG00000033053, gene:ENSEOMG00000036783, gene:ENSEOMG00000045706, gene:ENSEOMG00000047046, gene:ENSEOMG00000051576
Amaranthaceae	Chenopodium quinoa	6	CQ.Regalona.r1.1AG0005700, CQ.Regalona.r1.2BG0023960 ... CQ.Regalona.r1.5AG0027880, CQ.Regalona.r1.7BG0001710, CQ.Regalona.r1.8BG0000060, CQ.Regalona.r1.9AG0001460
Anacardiaceae	Pistacia vera	4	pistato.v30003430, pistato.v30025850, pistato.v30066330 ... pistato.v30108770
Apiaceae	Apium graveolens	3	Ag10G00267, Ag1G01711, Ag5G01116
Arecaceae	Cocos nucifera	7	COCNU_01G013080, COCNU_07G008710, COCNU_09G000910 ... COCNU_11G011170, scaffold000650G000020, scaffold016239G000100, scaffold045783G000010
Arecaceae	Phoenix dactylifera	9	gene-LOC103696144, gene-LOC103696960, gene-LOC103701120 ... gene-LOC103701177, gene-LOC103702363, gene-LOC103702796, gene-LOC103710668, gene-LOC103720912, gene-LOC103720921
Asparagaceae	Asparagus officinalis	8	AsparagusV1_01.1144.V1.1, AsparagusV1_01.1145.V1.1 ... AsparagusV1_01.3287.V1.1, AsparagusV1_01.512.V1.1, AsparagusV1_04.1381.V1.1, AsparagusV1_04.600.V1.1, AsparagusV1_05.2164.V1.1, AsparagusV1_05.734.V1.1
Asteraceae	Flaveria trinervia	6	Ftri11G26352, Ftri13G02954, Ftri5G18793, Ftri7G22982 ... FtriNA19628, FtriNA24316
Brassicaceae	Arabidopsis thaliana	4	AT2G46480.1, AT3G61130.1, AT4G38270.1, AT5G47780.1
Brassicaceae	Eutrema salsugineum	3	Thhalv10000819m.g.v1.0, Thhalv10005820m.g.v1.0 ... Thhalv10024734m.g.v1.0
Brassicaceae	Schrenkiella parvula	4	Sp2g12520.v2.2, Sp4g28480.v2.2, Sp5g02250.v2.2 ... Sp7g37450.v2.2
Brassicaceae	Brassica nigra	6	BniB02g064450.2N, BniB02g089750.2N, BniB04g009990.2N ... BniB06g062190.2N, BniB08g075230.2N, BniS06172g250.2N
Casuarinaceae	Casuarina equisetifolia	3	Ceq02G0452, Ceq02G1435, Ceq07G1819
Casuarinaceae	Casuarina glauca	5	Cgl02G0481, Cgl02G1479, Cgl07G1975, Cgl07G1982, Cgl07G2023
Cymodoceaceae	Cymodocea nodosa	5	gene.Cymno01g04630, gene.Cymno02g10290, gene.Cymno06g09670 ... gene.Cymno14g07660, gene.Cymno18g02790
Hydrocharitaceae	Thalassia testudinum	5	gene.Thate02g03430, gene.Thate02g03440, gene.Thate05g09190 ... gene.Thate06g06710, gene.Thate09g19100
Malvaceae	Hibiscus hamabo Siebold & Zucc.	2	nbisL1-mrna-3602, nbisL1-mrna-7766
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG04.982, evm.TU.LG08.425, evm.TU.LG12.1305
Plantaginaceae	Plantago ovata	3	Pov_00006118, Pov_00007056, Pov_00027481
Plumbaginaceae	Limonium bicolor	3	Lb2G10516, Lb4G21745, Lb4G22952
Poaceae	Echinochloa crus-galli	17	AH01.990, AH03.2339, AH03.2713, AH06.3035, AH08.1105 ... AH08.1932, BH03.2470, BH03.2856, BH06.2822, BH08.1097, BH08.2025, CH01.1181, CH03.2664, CH03.3062, CH08.1208, CH08.2203, Contig181.188
Poaceae	Eleusine coracana subsp. coracana	10	gene-QOZ80_3AG0220960, gene-QOZ80_3BG0266120 ... gene-QOZ80_6AG0528440, gene-QOZ80_6AG0539030, gene-QOZ80_6AG0551370, gene-QOZ80_6BG0482450, gene-QOZ80_6BG0492360, gene-QOZ80_6BG0504960, gene-QOZ80_8AG0625950, gene-QOZ80_8BG0653990
Poaceae	Hordeum vulgare	6	HORVU.MOREX.r3.1HG0083170.1, HORVU.MOREX.r3.4HG0334870.1 ... HORVU.MOREX.r3.5HG0489550.1, HORVU.MOREX.r3.5HG0498770.1, HORVU.MOREX.r3.7HG0677820.1, HORVU.MOREX.r3.7HG0751510.1
Poaceae	Lolium multiflorum	9	gene-QYE76_006047, gene-QYE76_006813, gene-QYE76_012642 ... gene-QYE76_024741, gene-QYE76_029813, gene-QYE76_037006, gene-QYE76_037081, gene-QYE76_062569, gene-QYE76_062571
Poaceae	Oryza coarctata	12	Oco11G017080, Oco12G017270, Oco12G017880, Oco15G006290 ... Oco15G011830, Oco16G006130, Oco16G010740, Oco17G007490, Oco17G010220, Oco18G007780, Oco18G010200, Oco19G002830
Poaceae	Oryza sativa	8	LOC_Os06g49810.1, LOC_Os06g51160.1, LOC_Os08g23780.1 ... LOC_Os08g38740.1, LOC_Os09g30280.1, LOC_Os09g36180.1, LOC_Os09g36190.1, LOC_Os10g21890.2
Poaceae	Paspalum vaginatum	6	gene-BS78_01G120600, gene-BS78_02G219200 ... gene-BS78_02G252500, gene-BS78_07G176500, gene-BS78_10G185900, gene-BS78_10G216500
Poaceae	Puccinellia tenuiflora	10	Pt_Chr0104938, Pt_Chr0203653, Pt_Chr0206882, Pt_Chr0207175 ... Pt_Chr0401854, Pt_Chr0404015, Pt_Chr0700005, Pt_Chr0700993, Pt_Chr0701642, Pt_Chr0701673
Poaceae	Sporobolus alterniflorus	14	Chr01G008040, Chr0G007290, Chr0G021810, Chr10G007770 ... Chr10G022450, Chr12G029350, Chr14G010370, Chr14G015950, Chr14G015960, Chr14G015970, Chr16G012540, Chr17G011860, Chr21G010510, Chr21G014990
Poaceae	Thinopyrum elongatum	7	Tel1E01G605700, Tel4E01G056800, Tel5E01G410300 ... Tel5E01G508500, Tel7E01G424000, Tel7E01G956900, Tel7E01G957700
Poaceae	Triticum dicoccoides	12	gene_TRIDC1AG054490, gene_TRIDC1BG062360 ... gene_TRIDC4AG043890, gene_TRIDC4BG004900, gene_TRIDC4BG020170, gene_TRIDC5AG040030, gene_TRIDC5AG047340, gene_TRIDC5BG042430, gene_TRIDC5BG051060, gene_TRIDC7AG030510, gene_TRIDC7AG076420, gene_TRIDC7BG021400
Poaceae	Triticum aestivum	18	TraesCS1A02G370800.2, TraesCS1B02G390000.1 ... TraesCS1D02G376900.2, TraesCS4A02G283700.1, TraesCS4B02G029400.1, TraesCS4D02G026900.1, TraesCS5A02G256400.1, TraesCS5A02G319800.1, TraesCS5B02G255700.1, TraesCS5B02G320100.2, TraesCS5D02G264700.1, TraesCS5D02G325800.2, TraesCS7A02G239100.1, TraesCS7A02G550200.1, TraesCS7B02G134900.2, TraesCS7B02G473600.1, TraesCS7D02G237000.1, TraesCSU02G105800.2
Poaceae	Zea mays	8	Zm00001eb053500_P001, Zm00001eb101530_P002 ... Zm00001eb103470_P001, Zm00001eb170740_P001, Zm00001eb217140_P002, Zm00001eb228580_P003, Zm00001eb239160_P001, Zm00001eb319550_P001
Poaceae	Zoysia japonica	3	nbis-gene-3390, nbis-gene-35292, nbis-gene-46575
Poaceae	Zoysia macrostachya	4	Zma_g3043, Zma_g32212, Zma_g32751, Zma_g33448
Portulacaceae	Portulaca oleracea	9	evm.TU.LG01.2036, evm.TU.LG04.1919, evm.TU.LG04.2367 ... evm.TU.LG06.418, evm.TU.LG07.1556, evm.TU.LG14.1217, evm.TU.LG15.1697, evm.TU.LG19.1197, evm.TU.LG24.1201
Posidoniaceae	Posidonia oceanica	4	gene.Posoc02g11470, gene.Posoc02g11480, gene.Posoc03g09130 ... gene.Posoc07g07320
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.Scaffold_2_RagTag.26, evm.TU.Scaffold_5_RagTag.343 ... evm.TU.Scaffold_7_RagTag.1414
Rhizophoraceae	Carallia pectinifolia	6	nbisL1-mrna-10914, nbisL1-mrna-20, nbisL1-mrna-20079 ... nbisL1-mrna-20212, nbisL1-mrna-53, nbisL1-mrna-9907
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-13551, nbisL1-mrna-15725, nbisL1-mrna-4756
Rhizophoraceae	Ceriops zippeliana	5	nbisL1-mrna-10472, nbisL1-mrna-13361, nbisL1-mrna-7121 ... nbisL1-mrna-7122, nbisL1-mrna-9296
Rhizophoraceae	Kandelia candel	4	evm.TU.utg000002l.240, evm.TU.utg000006l.528 ... evm.TU.utg000009l.1223, evm.TU.utg000018l.759
Rhizophoraceae	Kandelia obovata	4	Maker00003509, Maker00005482, Maker00011722, Maker00013386
Rhizophoraceae	Rhizophora apiculata	4	nbisL1-mrna-14079, nbisL1-mrna-3242, nbisL1-mrna-9062 ... nbisL1-mrna-9241
Rhizophoraceae	Rhizophora mangle	4	nbisL1-mrna-11251, nbisL1-mrna-12100, nbisL1-mrna-24141 ... nbisL1-mrna-6971
Salicaceae	Populus euphratica	6	populus_peu08426, populus_peu10498, populus_peu16911 ... populus_peu26567, populus_peu27806, populus_peu31744
Solanaceae	Lycium barbarum	4	gene-LOC132599398, gene-LOC132616213, gene-LOC132632977 ... gene-LOC132645634
Solanaceae	Solanum chilense	4	SOLCI002559700, SOLCI003417600, SOLCI004079300 ... SOLCI005586000
Solanaceae	Solanum pennellii	4	gene-LOC107002634, gene-LOC107006505, gene-LOC107007965 ... gene-LOC107017714
Tamaricaceae	Reaumuria soongarica	4	STRG.29206_chr11_+, STRG.8587_chr06_-, gene_11360, gene_2413
Tamaricaceae	Tamarix chinensis	4	TC03G2722, TC08G0010, TC09G2127, TC12G0838
Zosteraceae	Zostera marina	5	Zosma02g06360.v3.1, Zosma04g21470.v3.1, Zosma05g21800.v3.1 ... Zosma05g23600.v3.1, Zosma06g05150.v3.1