Basic Information
Locus ID:
Ag5G01079
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
F-box kelch-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 64809486 | 64815350 | + | Ag5G01079 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.01 | 39,676.65 Da | 40.45 | 81.98 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01344 | Kelch motif | 112 | 157 | 1.7E-9 | IPR006652 |
| Pfam | PF00646 | F-box domain | 21 | 61 | 3.2E-6 | IPR001810 |
| Pfam | PF01344 | Kelch motif | 159 | 189 | 1.7E-5 | IPR006652 |
| SUPERFAMILY | SSF117281 | Kelch motif | 74 | 321 | 8.76E-41 | IPR015915 |
| SUPERFAMILY | SSF81383 | F-box domain | 13 | 96 | 7.33E-9 | IPR036047 |
| Gene3D | G3DSA:2.120.10.80 | - | 58 | 333 | 2.5E-31 | IPR015915 |
| SMART | SM00256 | fbox_2 | 24 | 64 | 2.1E-4 | IPR001810 |
| SMART | SM00612 | kelc_smart | 123 | 170 | 2.5E-8 | IPR006652 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G61350.1 | SKP1 interacting partner 4. Encodes an SKP1 interacting partner (SKIP4). | 0 |
| RefSeq | XP_017215874.1 | PREDICTED: F-box/kelch-repeat protein SKIP4 [Daucus carota subsp. sativus] | 0 |
| Q9M2C9 | F-box/kelch-repeat protein SKIP4 OS=Arabidopsis thaliana OX=3702 GN=SKIP4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A161ZLJ4 | F-box domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_025187 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 8.6289 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 6.903625 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 6.704248 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 9.988566 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 8.476395 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 8.122708 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 7.390173 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 5.141937 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 13.994047 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 14.148507 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 14.028436 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 15.728252 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 16.176794 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 15.241611 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 10.09984 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 8.439858 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 9.551647 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 10.043155 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 7.871266 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 9.209244 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 8.730554 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 15.984449 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 16.667284 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 14.04117 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 13.721926 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 8.966175 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 8.787981 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 6.368921 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 8.549505 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 4.001934 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 4.482217 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 5.287388 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 12.412987 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 15.427404 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 13.874933 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 11.416685 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 3.728524 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 7.467883 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 6.132498 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 4.147852 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 2.77384 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 9.01333 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 10.020416 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 9.485918 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 11.312431 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 8.583125 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 11.081281 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 14.973183 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 15.680004 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 13.039307 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg29349 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_1g004770 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg44136, Sbi_jg49389 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg5905 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00000428 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl11100, Sgl16503 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000013965, gene:ENSEOMG00000034740 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1AG0002770, CQ.Regalona.r1.2BG0024730 |
| Apiaceae | Apium graveolens | 1 | Ag5G01079 |
| Arecaceae | Cocos nucifera | 2 | COCNU_08G010370, COCNU_09G007830 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103699234 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_10.1531.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri11G19817 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G61350.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10006061m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g02050.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB06g053240.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G0111 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G0111 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno02g09490 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate08g01350, gene.Thate08g01360 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-9506 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG08.187 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00030879, Pov_00032013 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G11059 |
| Poaceae | Echinochloa crus-galli | 3 | AH07.118, BH07.98, CH03.4724 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0513270, gene-QOZ80_6BG0465090 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0544420.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_019519 |
| Poaceae | Oryza coarctata | 2 | Oco03G000650, Oco04G000600 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g02350.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G012900 |
| Poaceae | Puccinellia tenuiflora | 6 | Pt_Chr0200970, Pt_Chr0200973, Pt_Chr0200975, Pt_Chr0200976 ... |
| Poaceae | Sporobolus alterniflorus | 3 | Chr11G020450, Chr14G003590, Chr21G002890 |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G098500 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC6AG004530, gene_TRIDC6BG006390 |
| Poaceae | Triticum aestivum | 3 | TraesCS6A02G037900.1, TraesCS6B02G052900.2 ... |
| Poaceae | Zea mays | 1 | Zm00001eb229830_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-35028 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g31561 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG04.2289, evm.TU.LG06.21 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g13990 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_5_RagTag.269 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-10848 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-19108 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-10527 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000006l.175 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00013749 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-9198 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-7031 |
| Salicaceae | Populus euphratica | 1 | populus_peu27708 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132645587 |
| Solanaceae | Solanum chilense | 1 | SOLCI002115700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107009737 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.29092_chr11_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC03G2444 |
| Zosteraceae | Zostera marina | 1 | Zosma04g23120.v3.1 |