halophFGD

Basic Information

Locus ID: Ag5G01058

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: DNA recombination

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr5	63449365	63450177	-	Ag5G01058

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.14	16,664.57 Da	44.38	123.47	0.18

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
SUPERFAMILY	SSF50249	Nucleic acid-binding proteins	2	73	9.59E-8	IPR012340
Gene3D	G3DSA:2.40.50.140	-	1	95	2.5E-14	-

Best hit

Source	Best Hit ID	Description	E-value
RefSeq	XP_017217020.1	PREDICTED: replication protein A 70 kDa DNA-binding subunit C-like [Daucus carota subsp. sativus]	0
TrEMBL	A0A6L5B9L1	Rep_fac-A_C domain-containing protein OS=Apium graveolens OX=4045 GN=AG4045_008303 PE=4 SV=1	0

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	22.756207	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	19.74889	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	12.264812	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	14.607609	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	17.333006	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	20.74942	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	14.341665	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	14.893155	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	10.243715	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	10.447063	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	10.571209	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	4.789268	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	12.001002	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	12.780696	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	26.424088	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	16.889566	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	26.10791	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	24.634634	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	23.361687	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	29.20149	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	21.864191	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	16.738178	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	20.576714	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	18.109985	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	19.239901	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	12.211916	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	28.321716	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	36.013744	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	14.355449	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	36.754135		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	84.259995		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	56.277718		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	36.851387		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	32.128052		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	48.27063		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	39.1954		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	40.134769		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	31.754812		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	19.265953	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	33.720833	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	74.226891	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	13.106706	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	6.044976	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	10.93681	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	9.034921	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	9.111553	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	6.22632	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	94.279991	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	135.751923	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	157.966751	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Aizoaceae	Mesembryanthemum crystallinum	3	gene_11242, gene_19988, gene_9588
Amaranthaceae	Atriplex hortensis	13	Ah001361, Ah001371, Ah002563, Ah006984, Ah006985, Ah007876 ... Ah010862, Ah025226, Ah029290, Ah030577, Ah037589, Ah038029, Ah038313
Amaranthaceae	Salicornia bigelovii	19	Sbi_jg149, Sbi_jg150, Sbi_jg16705, Sbi_jg3120, Sbi_jg33012 ... Sbi_jg34953, Sbi_jg39132, Sbi_jg40907, Sbi_jg40945, Sbi_jg4372, Sbi_jg52704, Sbi_jg52799, Sbi_jg56535, Sbi_jg59927, Sbi_jg6013, Sbi_jg6051, Sbi_jg6079, Sbi_jg6080, Sbi_jg62897
Amaranthaceae	Salicornia europaea	16	Seu_jg10453, Seu_jg17430, Seu_jg17914, Seu_jg1932 ... Seu_jg19683, Seu_jg20729, Seu_jg21730, Seu_jg23726, Seu_jg24231, Seu_jg24232, Seu_jg25610, Seu_jg26476, Seu_jg28167, Seu_jg3128, Seu_jg5300, Seu_jg6452
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00024462
Amaranthaceae	Suaeda glauca	10	Sgl03380, Sgl08498, Sgl31135, Sgl31147, Sgl32416, Sgl36490 ... Sgl37710, Sgl44281, Sgl49042, Sgl74206
Amaranthaceae	Chenopodium album	4	gene:ENSEOMG00000005026, gene:ENSEOMG00000015694 ... gene:ENSEOMG00000015873, gene:ENSEOMG00000034435
Amaranthaceae	Chenopodium quinoa	2	CQ.Regalona.r1.2AG0003620, CQ.Regalona.r1.8BG0010240
Apiaceae	Apium graveolens	27	Ag10G01033, Ag10G01574, Ag10G01896, Ag11G03153, Ag11G04618 ... Ag1G01595, Ag1G01599, Ag2G00391, Ag2G01149, Ag2G01625, Ag3G01857, Ag3G01971, Ag3G02116, Ag3G02639, Ag3G02752, Ag4G02157, Ag5G01058, Ag5G01367, Ag6G02577, Ag7G00861, Ag7G00882, Ag9G01197, Ag9G02116, Ag9G02235, AgUnG00818, AgUnG01095, AgUnG01450
Arecaceae	Cocos nucifera	2	COCNU_13G005920, scaffold010294G000060
Poaceae	Echinochloa crus-galli	7	AH01.5146, BH01.1939, BH02.822, BH09.2202, BH09.2414 ... CH01.2160, CH02.811
Poaceae	Oryza coarctata	1	Oco15G006230
Poaceae	Oryza sativa	8	LOC_Os05g02080.1, LOC_Os11g01460.1, LOC_Os11g38310.1 ... LOC_Os11g41180.1, LOC_Os11g44840.1, LOC_Os11g47400.1, LOC_Os12g26670.1, LOC_Os12g38520.1
Poaceae	Paspalum vaginatum	5	gene-BS78_01G191500, gene-BS78_05G005400 ... gene-BS78_05G239400, gene-BS78_05G271300, gene-BS78_05G282000
Poaceae	Puccinellia tenuiflora	7	Pt_Chr0201723, Pt_Chr0201724, Pt_Chr0201726, Pt_Chr0201806 ... Pt_Chr0501697, Pt_Chr0501742, Pt_Chr0602034
Poaceae	Sporobolus alterniflorus	2	Chr19G015510, Chr27G003730
Poaceae	Thinopyrum elongatum	10	Tel1E01G147700, Tel1E01G147800, Tel1E01G242200 ... Tel1E01G245800, Tel1E01G253400, Tel2E01G486300, Tel4E01G387800, Tel6E01G338100, Tel7E01G398200, Telscf1201G000300
Poaceae	Triticum dicoccoides	6	gene_TRIDC1BG023090, gene_TRIDC2AG046570 ... gene_TRIDC3AG028860, gene_TRIDC5BG032950, gene_TRIDC6BG030650, gene_TRIDC7BG033130
Solanaceae	Lycium barbarum	3	gene-LOC132600651, gene-LOC132619582, gene-LOC132621884
Solanaceae	Solanum chilense	7	SOLCI000818800, SOLCI000928800, SOLCI004930500 ... SOLCI004985800, SOLCI005662500, SOLCI006437700, SOLCI007519000
Solanaceae	Solanum pennellii	6	gene-LOC107003768, gene-LOC107019434, gene-LOC107019527 ... gene-LOC107020428, gene-LOC107024868, gene-LOC114077490