halophFGD

Basic Information

Locus ID: Ag5G01044

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: isoform X1

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr5	60278132	60288048	+	Ag5G01044

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.51	79,274.70 Da	51.62	85.06	-0.32

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd16650	SP-RING_PIAS_like	323	369	4.54867E-22	-
Pfam	PF02891	MIZ/SP-RING zinc finger	323	370	2.2E-21	IPR004181
SUPERFAMILY	SSF57850	RING/U-box	321	386	3.07E-5	-
Gene3D	G3DSA:3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	302	407	9.9E-33	IPR013083
ProSiteProfiles	PS51044	Zinc finger SP-RING-type profile.	311	388	35.499783	IPR004181
MobiDBLite	mobidb-lite	consensus disorder prediction	412	458	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	623	643	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	623	644	-	-

Gene Ontology

Molecular Function:

GO:0008270 (zinc ion binding)

KEGG Pathway

KO Term:

K04706 (E3 SUMO-protein ligase PIAS1 [EC:2.3.2.-])

Pathway:

ko04120 (Ubiquitin mediated proteolysis) map04120 (Ubiquitin mediated proteolysis) map04630 (JAK-STAT signaling pathway)

Best hit

Source	Best Hit ID	Description
TAIR	AT5G41580.1	RING/U-box superfamily protein.
RefSeq	XP_017216773.1	PREDICTED: E4 SUMO-protein ligase PIAL2-like isoform X2 [Daucus carota subsp. sativus]
Swiss-Prot	F4JYG0	E4 SUMO-protein ligase PIAL2 OS=Arabidopsis thaliana OX=3702 GN=PIAL2 PE=1 SV=1
TrEMBL	A0A164TXY1	3-methyl-2-oxobutanoate hydroxymethyltransferase OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_025216 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	0.359293	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	0.962963	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	0.908346	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	0.55403	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	0.344328	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	0.292873	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	0.458029	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	0.159723	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	1.278795	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	1.94081	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	1.888089	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	1.754482	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	1.445813	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	1.069028	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	1.380782	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	2.508883	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	2.067009	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	1.833068	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	2.018758	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	1.457029	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	0.975937	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	0.385771	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	1.133175	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	1.000072	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	0.623454	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	1.66054	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	1.013772	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	1.141642	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	1.407975	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	0.029808		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	0.078629		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	0.132999		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	0.354779		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	1.381391		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	0.490969		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	0.124334		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	0.578693		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	0.452018		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	0.738888	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	0.63169	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	0.363143	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	0.475766	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	0.296075	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	0.510221	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	0.678656	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	0.512332	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	0.574807	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	1.275973	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	1.844598	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	1.69856	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	4	jg23503, jg23504, jg23505, jg7665
Aizoaceae	Mesembryanthemum crystallinum	1	gene_14703
Amaranthaceae	Atriplex hortensis	1	Ah004548
Amaranthaceae	Beta vulgaris	1	BVRB_5g099780
Amaranthaceae	Salicornia bigelovii	2	Sbi_jg23947, Sbi_jg7772
Amaranthaceae	Salicornia europaea	1	Seu_jg12251
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00001130, GOSA_00001131
Amaranthaceae	Suaeda glauca	2	Sgl52121, Sgl57390
Amaranthaceae	Chenopodium album	3	gene:ENSEOMG00000004715, gene:ENSEOMG00000024019 ... gene:ENSEOMG00000024328
Amaranthaceae	Chenopodium quinoa	2	CQ.Regalona.r1.5AG0006690, CQ.Regalona.r1.5BG0006970
Anacardiaceae	Pistacia vera	1	pistato.v30135330
Apiaceae	Apium graveolens	3	Ag5G01044, Ag7G00162, Ag9G02776
Arecaceae	Cocos nucifera	2	COCNU_03G012330, COCNU_14G002070
Arecaceae	Phoenix dactylifera	2	gene-LOC103709002, gene-LOC103710882
Asparagaceae	Asparagus officinalis	3	AsparagusV1_05.650.V1.1, AsparagusV1_06.1420.V1.1 ... AsparagusV1_08.1233.V1.1
Asteraceae	Flaveria trinervia	4	Ftri13G02349, Ftri15G04516, Ftri3G16700, Ftri7G11976
Brassicaceae	Arabidopsis thaliana	2	AT1G08910.1, AT5G41580.1
Brassicaceae	Eutrema salsugineum	2	Thhalv10007035m.g.v1.0, Thhalv10027658m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp1g07530.v2.2, Sp7g00460.v2.2
Brassicaceae	Brassica nigra	5	BniB01g024830.2N, BniB02g004510.2N, BniB03g003000.2N ... BniB04g030860.2N, BniB06g059160.2N
Casuarinaceae	Casuarina equisetifolia	1	Ceq03G0267
Casuarinaceae	Casuarina glauca	1	Cgl03G0316
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno01g12180
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate03g16730, gene.Thate09g06650
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG10.1462, evm.TU.LG10.1463
Plantaginaceae	Plantago ovata	2	Pov_00005274, Pov_00028366
Plumbaginaceae	Limonium bicolor	3	Lb2G08295, Lb4G22008, Lb4G22072
Poaceae	Echinochloa crus-galli	3	AH06.364, BH06.481, CH06.481
Poaceae	Eleusine coracana subsp. coracana	1	gene-QOZ80_5AG0389310
Poaceae	Hordeum vulgare	1	HORVU.MOREX.r3.7HG0655510.1
Poaceae	Lolium multiflorum	1	gene-QYE76_028446
Poaceae	Oryza coarctata	2	Oco11G003040, Oco12G002990
Poaceae	Oryza sativa	1	LOC_Os06g06870.1
Poaceae	Paspalum vaginatum	1	gene-BS78_10G054300
Poaceae	Puccinellia tenuiflora	2	Pt_Chr0402079, Pt_Chr0402115
Poaceae	Sporobolus alterniflorus	7	Chr04G014810, Chr11G022190, Chr14G002310, Chr19G011080 ... Chr21G001410, Chr21G001420, Chr27G005070
Poaceae	Thinopyrum elongatum	1	Tel7E01G264700
Poaceae	Triticum dicoccoides	2	gene_TRIDC7AG014780, gene_TRIDC7BG004030
Poaceae	Triticum aestivum	3	TraesCS7A02G126400.2, TraesCS7B02G025700.2 ... TraesCS7D02G124300.3
Poaceae	Zea mays	1	Zm00001eb375680_P002
Poaceae	Zoysia japonica	3	nbis-gene-36651, nbis-gene-5104, nbis-gene-5105
Poaceae	Zoysia macrostachya	2	Zma_g25003, Zma_g29157
Portulacaceae	Portulaca oleracea	6	evm.TU.LG04.3322, evm.TU.LG10.455, evm.TU.LG16.275 ... evm.TU.LG17.451, evm.TU.LG17.452, evm.TU.LG17.453
Posidoniaceae	Posidonia oceanica	2	gene.Posoc03g22820, gene.Posoc09g07930
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-18251, nbisL1-mrna-22379
Rhizophoraceae	Ceriops tagal	1	nbisL1-mrna-4409
Rhizophoraceae	Ceriops zippeliana	1	nbisL1-mrna-20353
Rhizophoraceae	Kandelia candel	1	evm.TU.utg000022l.410
Rhizophoraceae	Kandelia obovata	1	Maker00014312
Rhizophoraceae	Rhizophora apiculata	1	nbisL1-mrna-3550
Rhizophoraceae	Rhizophora mangle	1	nbisL1-mrna-6716
Salicaceae	Populus euphratica	1	populus_peu34461
Solanaceae	Lycium barbarum	1	gene-LOC132609914
Solanaceae	Solanum chilense	1	SOLCI005109000
Solanaceae	Solanum pennellii	3	gene-LOC107008392, gene-LOC107025269, gene-LOC107028827
Tamaricaceae	Reaumuria soongarica	1	gene_14758
Tamaricaceae	Tamarix chinensis	1	TC01G3190
Zosteraceae	Zostera marina	2	Zosma04g03260.v3.1, Zosma05g03750.v3.1