Basic Information
Locus ID:
Ag5G00955
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 50624202 | 50625920 | - | Ag5G00955 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.57 | 7,989.98 Da | 28.43 | 97.32 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G15550.2 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_017237341.1 | PREDICTED: ribosome biogenesis protein WDR12 homolog [Daucus carota subsp. sativus] | 0 |
| Q9LF27 | Ribosome biogenesis protein WDR12 homolog OS=Arabidopsis thaliana OX=3702 GN=WDR12 PE=1 SV=1 | 0 | |
| TrEMBL | A0A166B2Z2 | Ribosome biogenesis protein WDR12 homolog OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_011042 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 9.581152 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 7.888416 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 9.953513 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 9.620911 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 11.159461 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 13.319724 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 9.033483 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 5.608066 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 14.91452 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 12.766332 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 12.344415 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 18.44908 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 15.733113 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 19.339804 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 4.367558 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 6.142547 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 5.107887 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 6.901106 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 6.509368 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 5.605574 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 7.514368 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 6.084682 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 13.814219 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 10.190392 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 9.039584 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 4.571468 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 3.217245 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 12.688072 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 8.189146 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 6.397493 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 15.092025 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 22.725275 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 13.266512 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 3.584063 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 8.464236 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 8.46099 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 5.860063 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 6.200445 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 7.083721 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 5.718922 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 5.712286 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 11.546759 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 10.659192 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 9.204127 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 29.136034 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 29.153805 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 27.692875 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg30563 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_14585 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah033568 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg51064, Sbi_jg60138 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg24317 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00015835 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl78419, Sgl80928 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000018781, gene:ENSEOMG00000039770 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.9AG0004050, CQ.Regalona.r1.9AG0004060 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30192970 |
| Apiaceae | Apium graveolens | 2 | Ag4G00955, Ag5G00955 |
| Arecaceae | Cocos nucifera | 3 | COCNU_05G001960, COCNU_13G005680, scaffold018987G000010 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103708248, gene-LOC103710242 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_03.2073.V1.1, AsparagusV1_03.2074.V1.1 ... |
| Asteraceae | Flaveria trinervia | 1 | Ftri18G32960 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G15550.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10013619m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g28530.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB02g047340.2N, BniB05g023180.2N, BniB08g007450.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G0430 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G0383 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno01g09480 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0179s00021.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g01080 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.285 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00028053 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G18482 |
| Poaceae | Echinochloa crus-galli | 5 | AH03.3616, AH06.2319, AH07.2940, BH03.3950, CH03.4060 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5AG0396340, gene-QOZ80_5BG0444630 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0127540.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_039888 |
| Poaceae | Oryza coarctata | 2 | Oco13G011880, Oco14G012680 |
| Poaceae | Oryza sativa | 1 | LOC_Os07g40930.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G340900 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0205994, Pt_Chr0307527 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr01G035580, Chr04G012410, Chr07G011830, Chr12G003990 |
| Poaceae | Thinopyrum elongatum | 3 | Tel2E01G346000, Tel2E01G616200, Tel7E01G537300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG022730, gene_TRIDC2BG026650 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G177700.1, TraesCS2B02G204800.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb326820_P001 |
| Poaceae | Zoysia japonica | 3 | nbis-gene-27820, nbis-gene-32873, nbis-gene-57074 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g5506 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG05.1376, evm.TU.LG07.1498 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g19950 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_3_RagTag.1712, evm.TU.Scaffold_6_RagTag.356 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-2025, nbisL1-mrna-2166 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-10591 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-2905 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000023l.135, evm.TU.utg000019l.198 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00002165 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-12174 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-18222 |
| Salicaceae | Populus euphratica | 3 | populus_peu09341, populus_peu25183, populus_peu37959 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132599276, gene-LOC132623186 |
| Solanaceae | Solanum chilense | 2 | SOLCI005080000, SOLCI007044900 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107009695, gene-LOC107012676 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.11856_chr02_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC02G1578 |
| Zosteraceae | Zostera marina | 1 | Zosma04g06050.v3.1 |