Basic Information
Locus ID:
Ag5G00948
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
NYN domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 48871088 | 48875106 | - | Ag5G00948 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.83 | 71,342.35 Da | 46.67 | 76.22 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10910 | PIN_limkain_b1_N_like | 26 | 150 | 1.89877E-60 | - |
| Pfam | PF01936 | NYN domain | 26 | 162 | 2.6E-30 | IPR021139 |
| Pfam | PF14418 | OST-HTH Associated domain | 592 | 649 | 4.2E-11 | IPR025677 |
| Gene3D | G3DSA:3.40.50.1010 | - | 21 | 169 | 1.7E-7 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 226 | 260 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 245 | 260 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62200.1 | Putative endonuclease or glycosyl hydrolase. | 0 |
| RefSeq | XP_017218782.1 | PREDICTED: uncharacterized protein LOC108196152 [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A164TZZ1 | NYN domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_025306 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 50.859066 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 40.29464 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 50.301533 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 50.283062 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 52.320911 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 64.355759 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 51.522953 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 53.029514 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 62.679874 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 61.435478 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 68.63401 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 54.798515 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 63.43232 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 40.072628 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 35.633945 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 36.170021 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 35.044674 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 59.83971 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 38.418255 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 53.08297 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 62.750671 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 37.634079 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 43.95927 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 32.516613 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 39.550716 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 35.094124 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 34.131577 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 34.478046 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 39.837677 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 11.05294 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 13.494641 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 9.598152 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 40.016949 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 30.335304 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 48.765251 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 26.548731 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 15.333831 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 19.635401 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 30.197271 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 32.23595 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 21.721968 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 61.069073 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 71.653458 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 78.875351 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 82.968391 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 58.668373 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 71.455734 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 36.078381 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 41.266747 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 40.468834 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg1360, jg1361, jg28284 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_13409 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah000019 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g122630 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg31202, Sbi_jg40574, Sbi_jg50602, Sbi_jg58072 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg2161, Seu_jg25694 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00004565, GOSA_00015978 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl45144, Sgl49990, Sgl54628, Sgl59964 |
| Amaranthaceae | Chenopodium album | 7 | gene:ENSEOMG00000006582, gene:ENSEOMG00000011564 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.5AG0028110, CQ.Regalona.r1.5BG0029410 ... |
| Anacardiaceae | Pistacia vera | 3 | pistato.v30007430, pistato.v30095600, pistato.v30096030 |
| Apiaceae | Apium graveolens | 4 | Ag10G00584, Ag11G03948, Ag2G01799, Ag5G00948 |
| Arecaceae | Cocos nucifera | 1 | COCNU_01G015580 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103707687, gene-LOC120112031 |
| Asparagaceae | Asparagus officinalis | 4 | AsparagusV1_02.2256.V1.1, AsparagusV1_04.2023.V1.1 ... |
| Asteraceae | Flaveria trinervia | 1 | Ftri15G06846 |
| Brassicaceae | Arabidopsis thaliana | 6 | AT3G60940.1, AT3G61028.2, AT3G62200.1, AT3G62210.1 ... |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10003587m.g.v1.0, Thhalv10003670m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 4 | Sp2g24420.v2.2, Sp2g24430.v2.2, Sp5g01180.v2.2 ... |
| Brassicaceae | Brassica nigra | 8 | BniB02g076030.2N, BniB03g020810.2N, BniB03g045060.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G0533 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G0553 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate01g18160, gene.Thate02g01740 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-6203, nbisL1-mrna-9577 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.530 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00007097, Pov_00016530 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G00577 |
| Poaceae | Echinochloa crus-galli | 3 | AH03.3835, BH03.4118, CH03.4395 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_7AG0578920 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0121010.1, HORVU.MOREX.r3.2HG0121110.1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_039355, gene-QYE76_039356, gene-QYE76_039357 |
| Poaceae | Oryza coarctata | 2 | Oco13G013800, Oco14G014630 |
| Poaceae | Oryza sativa | 1 | LOC_Os07g44320.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G365400 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0304813, Pt_Chr0304816, Pt_Chr0304819, Pt_Chr0304821 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr19G001400, Chr24G014200, Chr27G015920, Chr28G012740 |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G302800, Tel4E01G294800 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG018900, gene_TRIDC2BG022720 |
| Poaceae | Triticum aestivum | 6 | TraesCS2A02G150200.1, TraesCS2A02G150300.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb109990_P001, Zm00001eb328720_P002 |
| Poaceae | Zoysia japonica | 3 | nbis-gene-1464, nbis-gene-267, nbis-gene-33090 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g3573, Zma_g5651, Zma_g6935 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG08.286, evm.TU.LG11.1711 |
| Posidoniaceae | Posidonia oceanica | 3 | gene.Posoc01g12610, gene.Posoc01g12660, gene.Posoc01g12670 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_5_RagTag.745 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-10594 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-13651 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-11390 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000006l.598 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00013556 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-10153 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-7379 |
| Salicaceae | Populus euphratica | 3 | populus_peu13168, populus_peu15549, populus_peu15550 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132598507, gene-LOC132624935 |
| Solanaceae | Solanum chilense | 4 | SOLCI004444200, SOLCI004444400, SOLCI006622000 ... |
| Solanaceae | Solanum pennellii | 5 | gene-LOC107005422, gene-LOC107010177, gene-LOC107010179 ... |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.17512_chr09_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC07G2846 |