Basic Information
Locus ID:
Ag5G00946
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Alanine aminotransferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 48318099 | 48358346 | - | Ag5G00946 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.63 | 243,926.13 Da | 40.15 | 94.67 | -0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00519 | Lipase_3 | 166 | 344 | 2.5195E-29 | - |
| CDD | cd00609 | AAT_like | 1818 | 2190 | 9.09004E-57 | - |
| Pfam | PF00155 | Aminotransferase class I and II | 1825 | 2178 | 1.3E-36 | IPR004839 |
| Pfam | PF13855 | Leucine rich repeat | 943 | 1001 | 1.5E-6 | IPR001611 |
| Pfam | PF00069 | Protein kinase domain | 1264 | 1439 | 6.2E-35 | IPR000719 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 464 | 506 | 5.9E-7 | IPR013210 |
| Pfam | PF13855 | Leucine rich repeat | 605 | 665 | 4.8E-9 | IPR001611 |
| Pfam | PF00560 | Leucine Rich Repeat | 535 | 556 | 1.4 | IPR001611 |
| Pfam | PF01764 | Lipase (class 3) | 225 | 330 | 7.2E-32 | IPR002921 |
| SUPERFAMILY | SSF53474 | alpha/beta-Hydrolases | 234 | 346 | 1.33E-20 | IPR029058 |
| SUPERFAMILY | SSF52058 | L domain-like | 863 | 1178 | 6.46E-50 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 513 | 865 | 5.81E-68 | - |
| SUPERFAMILY | SSF53383 | PLP-dependent transferases | 1802 | 2191 | 9.0E-70 | IPR015424 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 1252 | 1440 | 3.51E-50 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1339 | 1446 | 3.3E-30 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 1232 | 1338 | 2.6E-17 | - |
| Gene3D | G3DSA:1.10.287.1970 | - | 1778 | 1828 | 2.2E-204 | - |
| Gene3D | G3DSA:3.40.50.1820 | alpha/beta hydrolase | 183 | 377 | 2.3E-32 | IPR029058 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 588 | 696 | 7.8E-32 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 464 | 586 | 1.5E-28 | IPR032675 |
| Gene3D | G3DSA:3.40.640.10 | - | 1829 | 2075 | 2.2E-204 | IPR015421 |
| Gene3D | G3DSA:3.90.1150.10 | Aspartate Aminotransferase, domain 1 | 1749 | 2199 | 2.2E-204 | IPR015422 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 941 | 1183 | 5.3E-57 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 697 | 940 | 1.0E-71 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 628 | 651 | 54.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 845 | 868 | 400.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 676 | 700 | 250.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 532 | 556 | 39.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 1087 | 1111 | 160.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 797 | 821 | 35.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 964 | 987 | 260.0 | IPR003591 |
| SMART | SM00220 | serkin_6 | 1262 | 1570 | 6.7E-13 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 749 | 773 | 19.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 1036 | 1060 | 73.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 652 | 675 | 130.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1262 | 1569 | 26.053921 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 1384 | 1396 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 1268 | 1291 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 202 | 219 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 202 | 221 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Pathway:
ko00220 (Arginine biosynthesis)
map00220 (Arginine biosynthesis)
ko00250 (Alanine, aspartate and glutamate metabolism)
map00250 (Alanine, aspartate and glutamate metabolism)
ko00710 (Carbon fixation by Calvin cycle)
map00710 (Carbon fixation by Calvin cycle)
ko01100 (Metabolic pathways)
map01100 (Metabolic pathways)
ko01120 (Microbial metabolism in diverse environments)
map01120 (Microbial metabolism in diverse environments)
ko01200 (Carbon metabolism)
map01200 (Carbon metabolism)
ko01210 (2-Oxocarboxylic acid metabolism)
map01210 (2-Oxocarboxylic acid metabolism)
ko01230 (Biosynthesis of amino acids)
map01230 (Biosynthesis of amino acids)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17290.1 | alanine aminotransferas. Encodes for alanine aminotransferase (ALAAT1), involved in alanine catabolism during plants recovery from hypoxia | 0 |
| RefSeq | XP_017218454.1 | PREDICTED: alanine aminotransferase 1, mitochondrial isoform X1 [Daucus carota subsp. sativus] | 0 |
| F4I7I0 | Alanine aminotransferase 1, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=ALAAT1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A164UTU6 | Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_026433 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 12.968596 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 10.992898 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 10.788155 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 9.483105 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 10.332521 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 13.228784 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 8.400545 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 7.353437 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 34.884129 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 34.04047 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 29.802488 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 16.448412 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 18.589132 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 13.995972 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 7.141066 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 12.905991 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 6.662809 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 17.297131 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 18.145609 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 19.68252 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 17.21554 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 11.773784 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 12.322987 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 11.305395 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 14.413832 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 11.900738 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 12.328243 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 10.858782 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 11.756754 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 2.771958 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 5.429447 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 4.505454 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 11.38629 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 10.522227 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 12.96984 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 4.587237 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 4.025015 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 3.904061 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 11.574928 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 8.435106 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 6.46113 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 6.848799 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 16.982639 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 12.055863 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 10.955508 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 8.09772 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 12.394885 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 24.599085 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 16.880785 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 15.271573 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg25121 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_5488, gene_5538 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah028639, Ah032252 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g168750 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg1920, Sbi_jg1921, Sbi_jg34604 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg2848 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00011667 |
| Amaranthaceae | Suaeda glauca | 1 | Sgl77043 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000038304, gene:ENSEOMG00000041738 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30131070 |
| Apiaceae | Apium graveolens | 1 | Ag5G00946 |
| Arecaceae | Cocos nucifera | 1 | COCNU_01G004450 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103699427 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_01.3447.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri4G25440 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G73090.2 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10018923m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g28050.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB05g070270.2N, BniB07g040530.2N |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno02g05040 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0640s00002.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g06010 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.660 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG19.201, evm.TU.LG24.438 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g24780 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_2_RagTag.1212 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-3872 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-17280 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-18781 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000009l.494 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00005872 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-12397 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-5511 |
| Salicaceae | Populus euphratica | 2 | populus_peu19850, populus_peu19851 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132645004 |
| Solanaceae | Solanum chilense | 1 | SOLCI006111600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107023442 |
| Tamaricaceae | Reaumuria soongarica | 1 | MSTRG.18471_chr10_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC05G0627 |
| Zosteraceae | Zostera marina | 1 | Zosma01g04340.v3.1 |