Basic Information
Locus ID:
Ag5G00928
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Short Name:
RBX1
Description:
RING-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 47238264 | 47240116 | + | Ag5G00928 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.54 | 10,467.90 Da | 62.58 | 66.60 | 0.31 |
Protein Domain:
KEGG Pathway
Pathway:
ko03420 (Nucleotide excision repair)
map03420 (Nucleotide excision repair)
ko04066 (HIF-1 signaling pathway)
map04066 (HIF-1 signaling pathway)
ko04110 (Cell cycle)
map04110 (Cell cycle)
ko04111 (Cell cycle - yeast)
map04111 (Cell cycle - yeast)
ko04114 (Oocyte meiosis)
map04114 (Oocyte meiosis)
ko04120 (Ubiquitin mediated proteolysis)
map04120 (Ubiquitin mediated proteolysis)
ko04141 (Protein processing in endoplasmic reticulum)
map04141 (Protein processing in endoplasmic reticulum)
ko04310 (Wnt signaling pathway)
map04310 (Wnt signaling pathway)
ko04341 (Hedgehog signaling pathway - fly)
map04341 (Hedgehog signaling pathway - fly)
ko04350 (TGF-beta signaling pathway)
map04350 (TGF-beta signaling pathway)
ko04710 (Circadian rhythm)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G20570.1 | RING-box 1. Encodes a ring-box 1 like protein and component of the SCF ubiquitinization complex mediating auxin responses. Forms a E3 ubiquitin ligase complex with CUL3A and At1g21780.1 a BTB domain protein. | 0 |
| RefSeq | XP_021646375.1 | RING-box protein 1a-like isoform X2 [Hevea brasiliensis] | 0 |
| Q940X7 | RING-box protein 1a OS=Arabidopsis thaliana OX=3702 GN=RBX1A PE=1 SV=1 | 0 | |
| TrEMBL | A0A5B6VGH6 | RING-box 1a-like protein OS=Gossypium australe OX=47621 GN=pip1 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 41.366169 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 28.161398 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 25.718235 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 30.404997 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 27.124102 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 25.696436 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 26.533155 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 14.539288 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 73.662094 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 69.656769 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 69.999619 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 75.206795 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 69.469612 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 74.127121 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 39.587357 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 36.10223 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 38.920349 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 42.457268 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 38.861374 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 48.266834 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 49.253811 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 40.050079 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 36.42926 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 40.152225 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 43.817211 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 35.146431 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 30.475098 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 35.50938 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 33.8885 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 74.364067 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 73.21743 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 68.803764 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 38.834846 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 63.177826 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 46.262547 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 76.829262 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 91.396141 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 86.551285 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 37.305962 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 41.879402 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 48.878315 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 50.406548 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 49.3801 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 50.331409 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 41.481232 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 62.423214 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 34.611755 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 95.335548 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 83.839325 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 74.774651 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg31759, jg32867 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_5593, gene_6709 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah015084, Ah028771 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g169890 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg2032, Sbi_jg24671, Sbi_jg34473, Sbi_jg8531 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg20063, Seu_jg2736 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00002832, GOSA_00022736 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl42793, Sgl47546, Sgl73464, Sgl76984 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000006147, gene:ENSEOMG00000008875 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.8AG0016080, CQ.Regalona.r1.8BG0017210 ... |
| Anacardiaceae | Pistacia vera | 3 | pistato.v30119070, pistato.v30217960, pistato.v30260170 |
| Apiaceae | Apium graveolens | 1 | Ag5G00928 |
| Arecaceae | Cocos nucifera | 2 | COCNU_05G010060, scaffold021465G000020 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103701991, gene-LOC103711519, gene-LOC120113304 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_06.624.V1.1, AsparagusV1_07.2901.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri18G18073, Ftri4G01090 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT3G42830.1, AT5G20570.2 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10009688m.g.v1.0, Thhalv10015047m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 3 | Sp6g23910.v2.2, SpUn0007_0070.v2.2, SpUn0013_0100.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB02g042270.2N, BniB05g042950.2N, BniB08g010520.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G0777 |
| Cymodoceaceae | Cymodocea nodosa | 3 | gene.Cymno03g10980, gene.Cymno09g01350, gene.Cymno11g09960 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0066s00032.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate05g25780, gene.Thate09g19560 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG01.154, evm.TU.LG07.1325 |
| Plantaginaceae | Plantago ovata | 4 | Pov_00001564, Pov_00001833, Pov_00001842, Pov_00004024 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G17973 |
| Poaceae | Echinochloa crus-galli | 6 | AH02.1109, AH07.3164, BH02.998, BH07.2995, CH02.1104 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_1AG0006490, gene-QOZ80_1BG0055210 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.3HG0218390.1, HORVU.MOREX.r3.6HG0607930.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_018934, gene-QYE76_049722 |
| Poaceae | Oryza coarctata | 3 | Oco02G000360, Oco03G019460, Oco04G020240 |
| Poaceae | Oryza sativa | 2 | LOC_Os01g01700.1, LOC_Os02g47870.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_03G087500, gene-BS78_04G249100 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0205913, Pt_Chr0206472, Pt_Chr0206709 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr02G025370, Chr03G002750, Chr05G003110, Chr06G003980 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel3E01G001800, Tel6E01G502100 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC3AG003210, gene_TRIDC3BG000130 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS3A02G001800.1, TraesCS3B02G000800.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb126700_P001, Zm00001eb188540_P001 ... |
| Poaceae | Zoysia japonica | 4 | nbis-gene-22089, nbis-gene-32343, nbis-gene-45820 ... |
| Poaceae | Zoysia macrostachya | 3 | Zma_g16987, Zma_g7470, Zma_g9809 |
| Portulacaceae | Portulaca oleracea | 6 | evm.TU.LG02.2454, evm.TU.LG12.1596, evm.TU.LG19.67 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc02g27240, gene.Posoc08g03970 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_10_RagTag.577, evm.TU.Scaffold_4_RagTag.1010 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-12936, nbisL1-mrna-6774 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-12818, nbisL1-mrna-14674 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-16966 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000008l.656, evm.TU.utg000033l.405 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00000502, Maker00015081 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-3979 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-8126 |
| Salicaceae | Populus euphratica | 2 | populus_peu02900, populus_peu33796 |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132633526, gene-LOC132636921, gene-LOC132645335 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107005489, gene-LOC107021447 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_530 |
| Tamaricaceae | Tamarix chinensis | 1 | TC05G0471 |
| Zosteraceae | Zostera marina | 2 | Zosma05g13680.v3.1, Zosma05g13690.v3.1 |