halophFGD

Basic Information

Locus ID: Ag5G00920

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Belongs to the protein kinase superfamily

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr5	45990024	45994550	-	Ag5G00920

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.48	22,950.69 Da	46.62	80.67	-0.48

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	5	123	7.72E-29	IPR011009
Gene3D	G3DSA:3.30.200.20	Phosphorylase Kinase; domain 1	2	85	1.2E-41	-
SMART	SM00220	serkin_6	9	207	0.0099	IPR000719
ProSiteProfiles	PS50011	Protein kinase domain profile.	9	209	11.128418	IPR000719
ProSitePatterns	PS00107	Protein kinases ATP-binding region signature.	15	38	-	IPR017441
MobiDBLite	mobidb-lite	consensus disorder prediction	117	131	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	144	191	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	117	195	-	-

Gene Ontology

Biological Process:

GO:0006468 (protein phosphorylation)

Molecular Function:

GO:0004672 (protein kinase activity) GO:0005524 (ATP binding)

KEGG Pathway

KO Term:

K02218 (casein kinase 1 [EC:2.7.11.1])

Pathway:

ko04011 (MAPK signaling pathway - yeast) map04011 (MAPK signaling pathway - yeast) ko04392 (Hippo signaling pathway - multiple species) map04392 (Hippo signaling pathway - multiple species)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G72710.1	casein kinase 1-like protein 2. Encodes a member of the casein kinase 1 protein family that is localized to the cytoplasm and nucleus.
RefSeq	XP_017219083.1	PREDICTED: casein kinase I-like [Daucus carota subsp. sativus]
Swiss-Prot	Q9CAI5	Casein kinase 1-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=CKL2 PE=1 SV=1
TrEMBL	A0A161X9R4	non-specific serine/threonine protein kinase OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_026408 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	71.478455	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	54.154694	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	63.447502	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	61.811867	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	65.18866	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	67.936264	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	54.360233	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	63.903126	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	58.723541	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	57.184296	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	65.495567	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	59.642559	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	59.251911	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	51.251389	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	48.890175	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	57.10231	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	50.218311	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	63.538475	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	43.205845	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	69.878159	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	77.165604	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	70.378349	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	69.673233	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	61.522423	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	63.680111	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	58.369663	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	60.855682	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	55.911114	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	60.413738	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	50.161858		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	47.803188		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	36.424606		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	81.245049		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	63.836586		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	91.145073		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	76.811676		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	57.588348		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	65.706596		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	44.206711	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	34.397614	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	32.685165	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	114.524315	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	108.289536	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	151.337814	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	160.085419	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	111.043213	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	118.710304	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	71.876678	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	82.053528	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	77.637726	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Amaranthaceae	Atriplex hortensis	1	Ah006375
Amaranthaceae	Chenopodium album	1	gene:ENSEOMG00000010269
Amaranthaceae	Chenopodium quinoa	1	CQ.Regalona.r1.4AG0011600
Apiaceae	Apium graveolens	6	Ag10G00887, Ag4G00179, Ag5G00920, Ag5G01818, Ag6G02731 ... Ag7G02452
Asparagaceae	Asparagus officinalis	2	AsparagusV1_04.84.V1.1, AsparagusV1_Unassigned.1111.V1.1
Brassicaceae	Brassica nigra	1	BniB03g068750.2N
Plumbaginaceae	Limonium bicolor	1	Lb1G02064
Poaceae	Echinochloa crus-galli	1	CH01.3984
Poaceae	Lolium multiflorum	2	gene-QYE76_005496, gene-QYE76_008607
Poaceae	Sporobolus alterniflorus	1	Chr01G025590
Poaceae	Thinopyrum elongatum	2	Tel1E01G305200, Tel6E01G260700
Poaceae	Triticum dicoccoides	1	gene_TRIDC3AG018550
Poaceae	Zea mays	7	Zm00001eb046190_P001, Zm00001eb096600_P001 ... Zm00001eb174840_P001, Zm00001eb218210_P001, Zm00001eb220200_P001, Zm00001eb267450_P001, Zm00001eb287320_P001
Poaceae	Zoysia japonica	2	nbis-gene-29461, nbis-gene-39846
Rhizophoraceae	Ceriops tagal	1	nbisL1-mrna-8091
Rhizophoraceae	Ceriops zippeliana	1	nbisL1-mrna-4613
Rhizophoraceae	Rhizophora mangle	1	nbisL1-mrna-1978
Salicaceae	Populus euphratica	1	populus_peu22068