halophFGD

Basic Information

Locus ID: Ag5G00897

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: inactive protein kinase

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr5	44431322	44433433	-	Ag5G00897

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.67	16,234.47 Da	40.79	81.31	-0.34

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID

KEGG Pathway

KO Term:

K04733 (interleukin-1 receptor-associated kinase 4 [EC:2.7.11.1])

Pathway:

ko04010 (MAPK signaling pathway) map04010 (MAPK signaling pathway) map04064 (NF-kappa B signaling pathway) map04620 (Toll-like receptor signaling pathway) map04621 (NOD-like receptor signaling pathway) ko04624 (Toll and Imd signaling pathway) map04624 (Toll and Imd signaling pathway)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G55200.1	Protein kinase protein with adenine nucleotide alpha hydrolases-like domain.
RefSeq	XP_017215773.1	PREDICTED: inactive protein kinase SELMODRAFT_444075 [Daucus carota subsp. sativus]
TrEMBL	A0A164USN1	Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_026379 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	0	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	0	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	1.814997	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	1.605155	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	1.867204	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	1.528352	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	0	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	1.467789	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	9.147211	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	10.440632	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	8.53392	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	8.851357	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	14.249893	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	12.961123	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	0.216891	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	0.737978	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	0	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	3.115729	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	2.323519	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	2.390661	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	2.027831	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	0	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	0.157425	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	0	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	0	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	1.711127	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	1.571582	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	3.363853	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	2.123793	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	0		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	0		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	0		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	5.214051		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	1.129298		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	3.339901		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	3.715682		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	0		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	1.087331		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	4.79819	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	0.657515	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	0	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	0.309968	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	2.978878	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	19.150604	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	15.600498	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	0	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	13.246212	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	6.807142	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	5.911011	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	1.145327	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	4	jg13577, jg18070, jg25254, jg32939
Aizoaceae	Mesembryanthemum crystallinum	1	gene_5653
Amaranthaceae	Atriplex hortensis	2	Ah015607, Ah028906
Amaranthaceae	Beta vulgaris	2	BVRB_7g176600, BVRB_8g189910
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg25267, Sbi_jg27004, Sbi_jg33548, Sbi_jg9119
Amaranthaceae	Salicornia europaea	2	Seu_jg19476, Seu_jg8249
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00002930, GOSA_00011228
Amaranthaceae	Suaeda glauca	4	Sgl43080, Sgl47892, Sgl73263, Sgl76782
Amaranthaceae	Chenopodium album	6	gene:ENSEOMG00000006263, gene:ENSEOMG00000011197 ... gene:ENSEOMG00000031537, gene:ENSEOMG00000037107, gene:ENSEOMG00000037775, gene:ENSEOMG00000046896
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.7AG0000460, CQ.Regalona.r1.8AG0013400 ... CQ.Regalona.r1.8BG0014230, CQ.Regalona.r1.9BG0005320
Anacardiaceae	Pistacia vera	1	pistato.v30116480
Apiaceae	Apium graveolens	3	Ag4G00183, Ag5G00897, Ag8G00235
Arecaceae	Cocos nucifera	3	COCNU_06G004850, COCNU_14G003180, scaffold016103G000010
Arecaceae	Phoenix dactylifera	4	gene-LOC103707475, gene-LOC103711197, gene-LOC103721815 ... gene-LOC103722811
Asparagaceae	Asparagus officinalis	1	AsparagusV1_05.2924.V1.1
Asteraceae	Flaveria trinervia	5	Ftri18G07448, Ftri4G10591, Ftri4G29907, Ftri4G30698 ... Ftri8G01282
Brassicaceae	Arabidopsis thaliana	3	AT1G55200.1, AT3G13690.1, AT5G56790.1
Brassicaceae	Eutrema salsugineum	3	Thhalv10011319m.g.v1.0, Thhalv10012884m.g.v1.0 ... Thhalv10020139m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp1g40880.v2.2, Sp3g11890.v2.2, Sp6g18530.v2.2
Brassicaceae	Brassica nigra	7	BniB01g051510.2N, BniB02g035800.2N, BniB05g036390.2N ... BniB07g001370.2N, BniB07g027290.2N, BniB07g055420.2N, BniB07g055470.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq02G0887, Ceq06G0875
Casuarinaceae	Casuarina glauca	2	Cgl02G0898, Cgl06G0902
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno02g13220, gene.Cymno12g02810
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate06g13370, gene.Thate07g17230, gene.Thate09g07280
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-795
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG01.28, evm.TU.LG07.1215
Plantaginaceae	Plantago ovata	2	Pov_00002905, Pov_00025801
Plumbaginaceae	Limonium bicolor	2	Lb3G18709, Lb3G18728
Poaceae	Echinochloa crus-galli	6	AH02.2242, BH02.2342, BH05.1187, CH01.2675, CH02.2517 ... CH05.1523
Poaceae	Eleusine coracana subsp. coracana	3	gene-QOZ80_1AG0023500, gene-QOZ80_1BG0074020 ... gene-QOZ80_5AG0361200
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.1HG0094010.1, HORVU.MOREX.r3.3HG0270050.1
Poaceae	Lolium multiflorum	3	gene-QYE76_015089, gene-QYE76_053628, gene-QYE76_053697
Poaceae	Oryza coarctata	4	Oco01G014020, Oco02G014250, Oco09G018230, Oco10G018180
Poaceae	Oryza sativa	2	LOC_Os01g41870.2, LOC_Os05g51190.2
Poaceae	Paspalum vaginatum	3	gene-BS78_03G186200, gene-BS78_09G256900, gene-BS78_K137000
Poaceae	Puccinellia tenuiflora	3	Pt_Chr0505832, Pt_Chr0603241, Pt_Chr0605176
Poaceae	Sporobolus alterniflorus	6	Chr02G016160, Chr03G010490, Chr05G017720, Chr08G010670 ... Chr18G016000, Chr22G000070
Poaceae	Thinopyrum elongatum	2	Tel1E01G731200, Tel3E01G373700
Poaceae	Triticum dicoccoides	3	gene_TRIDC1AG063570, gene_TRIDC3AG032260 ... gene_TRIDC3BG036740
Poaceae	Triticum aestivum	5	TraesCS1A02G433100.1, TraesCS1B02G468900.1 ... TraesCS3A02G216100.1, TraesCS3B02G245800.1, TraesCS3D02G217700.1
Poaceae	Zea mays	3	Zm00001eb161420_P002, Zm00001eb297420_P001 ... Zm00001eb357760_P001
Poaceae	Zoysia japonica	3	nbis-gene-24711, nbis-gene-29320, nbis-gene-29579
Poaceae	Zoysia macrostachya	3	Zma_g10611, Zma_g28914, Zma_g8171
Portulacaceae	Portulaca oleracea	4	evm.TU.LG03.1888, evm.TU.LG14.174, evm.TU.LG19.346 ... evm.TU.LG24.201
Posidoniaceae	Posidonia oceanica	3	gene.Posoc03g28130, gene.Posoc08g12070, gene.Posoc09g06210
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_10_RagTag.1348 ... evm.TU.Scaffold_4_RagTag.1850
Rhizophoraceae	Carallia pectinifolia	4	nbisL1-mrna-25733, nbisL1-mrna-27678, nbisL1-mrna-27754 ... nbisL1-mrna-7077
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-5088, nbisL1-mrna-8076
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-23079, nbisL1-mrna-4634, nbisL1-mrna-8772
Rhizophoraceae	Kandelia candel	2	evm.TU.utg000004l.68, evm.TU.utg000008l.1050
Rhizophoraceae	Kandelia obovata	2	Maker00001406, Maker00003898
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-14833, nbisL1-mrna-16448
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-1144, nbisL1-mrna-17922
Salicaceae	Populus euphratica	4	populus_peu02627, populus_peu11937, populus_peu33516 ... populus_peu33517
Solanaceae	Lycium barbarum	3	gene-LOC132603712, gene-LOC132616663, gene-LOC132633454
Solanaceae	Solanum chilense	2	SOLCI001722600, SOLCI005557900
Solanaceae	Solanum pennellii	3	gene-LOC107007429, gene-LOC107014965, gene-LOC107026029
Tamaricaceae	Reaumuria soongarica	2	gene_10834, gene_3236
Tamaricaceae	Tamarix chinensis	2	TC08G1698, TC10G1720
Zosteraceae	Zostera marina	2	Zosma01g07410.v3.1, Zosma05g04320.v3.1