halophFGD

Basic Information

Locus ID: Ag5G00891

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: phosphatase 2A 55 kDa regulatory subunit B

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr5	43545982	43554638	-	Ag5G00891

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.63	56,995.78 Da	47.17	71.64	-0.48

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00400	WD domain, G-beta repeat	223	259	0.11	IPR001680
SUPERFAMILY	SSF50978	WD40 repeat-like	36	504	1.98E-35	IPR036322
Gene3D	G3DSA:2.130.10.10	-	208	510	3.0E-18	IPR015943
Gene3D	G3DSA:2.130.10.10	-	32	207	1.5E-7	IPR015943
SMART	SM00320	WD40_4	102	142	9.9	IPR001680
SMART	SM00320	WD40_4	28	63	4.2	IPR001680
SMART	SM00320	WD40_4	394	425	250.0	IPR001680
SMART	SM00320	WD40_4	220	259	0.51	IPR001680
SMART	SM00320	WD40_4	270	310	15.0	IPR001680
SMART	SM00320	WD40_4	329	367	350.0	IPR001680
PIRSF	PIRSF037309	PPA2_B55	9	512	3.8E-200	IPR000009
ProSitePatterns	PS01025	Protein phosphatase 2A regulatory subunit PR55 signature 2.	229	243	-	IPR018067
ProSitePatterns	PS01024	Protein phosphatase 2A regulatory subunit PR55 signature 1.	102	116	-	IPR018067
PRINTS	PR00600	Protein phosphatase PP2A 55kDa regulatory subunit signature	89	117	6.6E-160	IPR000009
PRINTS	PR00600	Protein phosphatase PP2A 55kDa regulatory subunit signature	287	315	6.6E-160	IPR000009
PRINTS	PR00600	Protein phosphatase PP2A 55kDa regulatory subunit signature	372	397	6.6E-160	IPR000009
PRINTS	PR00600	Protein phosphatase PP2A 55kDa regulatory subunit signature	231	258	6.6E-160	IPR000009
PRINTS	PR00600	Protein phosphatase PP2A 55kDa regulatory subunit signature	316	343	6.6E-160	IPR000009
PRINTS	PR00600	Protein phosphatase PP2A 55kDa regulatory subunit signature	398	424	6.6E-160	IPR000009
PRINTS	PR00600	Protein phosphatase PP2A 55kDa regulatory subunit signature	481	510	6.6E-160	IPR000009
PRINTS	PR00600	Protein phosphatase PP2A 55kDa regulatory subunit signature	42	62	6.6E-160	IPR000009
PRINTS	PR00600	Protein phosphatase PP2A 55kDa regulatory subunit signature	118	146	6.6E-160	IPR000009
PRINTS	PR00600	Protein phosphatase PP2A 55kDa regulatory subunit signature	259	286	6.6E-160	IPR000009
PRINTS	PR00600	Protein phosphatase PP2A 55kDa regulatory subunit signature	344	371	6.6E-160	IPR000009

Gene Ontology

Molecular Function:

GO:0005515 (protein binding) GO:0019888 (protein phosphatase regulator activity)

Cellular Component:

GO:0000159 (protein phosphatase type 2A complex)

KEGG Pathway

KO Term:

K04354 (serine/threonine-protein phosphatase 2A regulatory subunit B)

Pathway:

ko03015 (mRNA surveillance pathway) map03015 (mRNA surveillance pathway) ko04071 (Sphingolipid signaling pathway) map04071 (Sphingolipid signaling pathway) ko04111 (Cell cycle - yeast) map04111 (Cell cycle - yeast) ko04151 (PI3K-Akt signaling pathway) map04151 (PI3K-Akt signaling pathway) ko04152 (AMPK signaling pathway) map04152 (AMPK signaling pathway) ko04390 (Hippo signaling pathway) map04390 (Hippo signaling pathway) ko04391 (Hippo signaling pathway - fly) map04391 (Hippo signaling pathway - fly)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G17720.2	Protein phosphatase 2A, regulatory subunit PR55. type 2A protein serine/threonine phosphatase 55 kDa B
RefSeq	XP_017219115.1	PREDICTED: serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform [Daucus carota subsp. sativus]
Swiss-Prot	Q39247	Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform OS=Arabidopsis thaliana OX=3702 GN=PP2AB2 PE=1 SV=1
TrEMBL	A0A6N2C840	Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B OS=Solanum chilense OX=4083 GN=EJD97_013658 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	25.712164	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	21.183971	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	22.284073	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	22.900496	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	22.500549	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	21.237665	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	21.257788	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	19.895571	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	34.283764	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	32.530869	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	35.476986	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	31.471872	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	32.837711	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	28.784433	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	19.798559	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	17.636303	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	22.15543	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	23.010473	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	17.216406	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	24.774134	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	25.302107	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	27.441887	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	26.024376	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	27.572079	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	25.598335	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	24.339836	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	24.628428	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	16.938559	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	26.220257	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	6.301056		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	7.970081		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	6.502509		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	10.250349		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	13.437856		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	11.420701		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	8.492318		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	5.126969		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	6.040895		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	18.07859	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	14.69363	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	9.767573	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	30.0791	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	25.521803	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	23.910339	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	21.602404	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	36.053268	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	22.591307	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	31.270382	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	31.872282	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	27.010454	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	4	jg13574, jg18075, jg18764, jg25258
Aizoaceae	Mesembryanthemum crystallinum	2	gene_13182, gene_21265
Amaranthaceae	Atriplex hortensis	2	Ah011387, Ah034602
Amaranthaceae	Beta vulgaris	2	BVRB_2g033360, BVRB_9g211380
Amaranthaceae	Salicornia bigelovii	2	Sbi_jg11876, Sbi_jg46797
Amaranthaceae	Salicornia europaea	1	Seu_jg21101
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00020959
Amaranthaceae	Suaeda glauca	2	Sgl80203, Sgl82652
Amaranthaceae	Chenopodium album	6	gene:ENSEOMG00000016771, gene:ENSEOMG00000017072 ... gene:ENSEOMG00000019315, gene:ENSEOMG00000037230, gene:ENSEOMG00000051526, gene:ENSEOMG00000052976
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.2AG0014560, CQ.Regalona.r1.2BG0016560 ... CQ.Regalona.r1.9AG0011190, CQ.Regalona.r1.9BG0011270
Anacardiaceae	Pistacia vera	3	pistato.v30116380, pistato.v30139490, pistato.v30254480
Apiaceae	Apium graveolens	5	Ag4G00186, Ag4G00187, Ag5G00697, Ag5G00891, Ag6G01410
Arecaceae	Cocos nucifera	5	COCNU_02G001610, COCNU_03G014860, COCNU_05G010850 ... COCNU_06G005110, COCNU_14G003240
Arecaceae	Phoenix dactylifera	8	gene-LOC103702009, gene-LOC103703801, gene-LOC103709550 ... gene-LOC103711232, gene-LOC103721824, gene-LOC113462214, gene-LOC120107243, gene-LOC120109337
Asparagaceae	Asparagus officinalis	3	AsparagusV1_01.295.V1.1, AsparagusV1_05.2915.V1.1 ... AsparagusV1_06.558.V1.1
Asteraceae	Flaveria trinervia	8	Ftri10G25207, Ftri13G15029, Ftri18G18631, Ftri1G11803 ... Ftri3G32009, Ftri4G06019, Ftri4G25630, Ftri8G24664
Brassicaceae	Arabidopsis thaliana	2	AT1G17720.1, AT1G51690.3
Brassicaceae	Eutrema salsugineum	3	Thhalv10007406m.g.v1.0, Thhalv10011420m.g.v1.0 ... Thhalv10020527m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp1g15810.v2.2, Sp1g38330.v2.2, Sp3g19300.v2.2
Brassicaceae	Brassica nigra	8	BniB01g042070.2N, BniB03g007210.2N, BniB03g027760.2N ... BniB04g032070.2N, BniB04g058240.2N, BniB06g029070.2N, BniB07g004100.2N, BniB07g049970.2N
Casuarinaceae	Casuarina equisetifolia	4	Ceq02G0891, Ceq03G1657, Ceq03G2248, Ceq04G1961
Casuarinaceae	Casuarina glauca	3	Cgl02G0904, Cgl03G2385, Cgl04G2148
Cymodoceaceae	Cymodocea nodosa	4	gene.Cymno01g11750, gene.Cymno06g05450, gene.Cymno12g02800 ... gene.Cymno16g03380
Dunaliellaceae	Dunaliella salina	1	Dusal.0038s00001.v1.0
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate02g34590, gene.Thate09g07390, gene.Thate09g07950
Malvaceae	Hibiscus hamabo Siebold & Zucc.	2	nbisL1-mrna-7468, nbisL1-mrna-794
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG01.24, evm.TU.LG07.888, evm.TU.LG10.720
Plantaginaceae	Plantago ovata	3	Pov_00015237, Pov_00022145, Pov_00025792
Plumbaginaceae	Limonium bicolor	4	Lb1G05140, Lb2G14900, Lb3G20071, Lb4G26300
Poaceae	Echinochloa crus-galli	9	AH02.2233, AH06.2044, AH07.892, BH02.2336, BH06.1884 ... BH07.1019, CH02.2509, CH06.2065, CH07.773
Poaceae	Eleusine coracana subsp. coracana	6	gene-QOZ80_1AG0023420, gene-QOZ80_1BG0073940 ... gene-QOZ80_2AG0137550, gene-QOZ80_2BG0193180, gene-QOZ80_6AG0543070, gene-QOZ80_6BG0496290
Poaceae	Hordeum vulgare	3	HORVU.MOREX.r3.3HG0269870.1, HORVU.MOREX.r3.6HG0580090.2 ... HORVU.MOREX.r3.7HG0717590.1
Poaceae	Lolium multiflorum	3	gene-QYE76_021739, gene-QYE76_034512, gene-QYE76_053613
Poaceae	Oryza coarctata	7	Oco01G013920, Oco02G014170, Oco03G005890, Oco04G006120 ... Oco04G016030, Oco11G011280, Oco12G011400
Poaceae	Oryza sativa	3	LOC_Os01g41630.1, LOC_Os02g13110.2, LOC_Os06g36770.1
Poaceae	Paspalum vaginatum	3	gene-BS78_03G184700, gene-BS78_04G198300 ... gene-BS78_10G168300
Poaceae	Puccinellia tenuiflora	5	Pt_Chr0400470, Pt_Chr0400486, Pt_Chr0603201, Pt_Chr0603229 ... Pt_Chr0605368
Poaceae	Sporobolus alterniflorus	8	Chr02G016220, Chr02G029070, Chr03G010390, Chr05G006690 ... Chr05G017690, Chr08G010610, Chr10G016550, Chr11G005850
Poaceae	Thinopyrum elongatum	3	Tel3E01G370800, Tel6E01G369600, Tel7E01G622500
Poaceae	Triticum dicoccoides	6	gene_TRIDC3AG032040, gene_TRIDC3BG036680 ... gene_TRIDC6AG027410, gene_TRIDC6BG033560, gene_TRIDC7AG050180, gene_TRIDC7BG043590
Poaceae	Triticum aestivum	9	TraesCS3A02G214500.2, TraesCS3B02G245100.2 ... TraesCS3D02G217100.1, TraesCS6A02G187800.4, TraesCS6B02G216800.3, TraesCS6D02G178300.6, TraesCS7A02G358700.1, TraesCS7B02G268700.1, TraesCS7D02G364000.2
Poaceae	Zea mays	7	Zm00001eb161320_P002, Zm00001eb205080_P004 ... Zm00001eb243780_P001, Zm00001eb247180_P001, Zm00001eb336600_P001, Zm00001eb357700_P001, Zm00001eb384150_P001
Poaceae	Zoysia japonica	4	nbis-gene-10208, nbis-gene-29332, nbis-gene-29588 ... nbis-gene-9474
Poaceae	Zoysia macrostachya	3	Zma_g10605, Zma_g30709, Zma_g8167
Portulacaceae	Portulaca oleracea	6	evm.TU.LG05.2332, evm.TU.LG07.1096, evm.TU.LG07.1615 ... evm.TU.LG07.1616, evm.TU.LG15.1740, evm.TU.LG15.1745
Posidoniaceae	Posidonia oceanica	3	gene.Posoc03g19380, gene.Posoc03g21650, gene.Posoc09g06070
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.Scaffold_10_RagTag.1347 ... evm.TU.Scaffold_11_RagTag.1038, evm.TU.Scaffold_18_RagTag.648
Rhizophoraceae	Carallia pectinifolia	3	nbisL1-mrna-14718, nbisL1-mrna-27761, nbisL1-mrna-7075
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-15516, nbisL1-mrna-5019, nbisL1-mrna-8075
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-12601, nbisL1-mrna-8030, nbisL1-mrna-8773
Rhizophoraceae	Kandelia candel	3	evm.TU.utg000004l.67, evm.TU.utg000010l.123 ... evm.TU.utg000023l.72
Rhizophoraceae	Kandelia obovata	3	Maker00004088, Maker00008919, Maker00018738
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-16447, nbisL1-mrna-734, nbisL1-mrna-7404
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-17923, nbisL1-mrna-24322, nbisL1-mrna-8675
Salicaceae	Populus euphratica	6	populus_peu02604, populus_peu04981, populus_peu12674 ... populus_peu28666, populus_peu33506, populus_peu33509
Solanaceae	Lycium barbarum	4	gene-LOC132601443, gene-LOC132603710, gene-LOC132633450 ... gene-LOC132645676
Solanaceae	Solanum chilense	4	SOLCI003840200, SOLCI004096800, SOLCI005557600 ... SOLCI007425100
Solanaceae	Solanum pennellii	4	gene-LOC107007484, gene-LOC107015339, gene-LOC107021207 ... gene-LOC107023835
Tamaricaceae	Reaumuria soongarica	3	gene_10029, gene_3154, gene_3739
Tamaricaceae	Tamarix chinensis	3	TC01G2513, TC08G1710, TC10G2106
Zosteraceae	Zostera marina	4	Zosma05g12250.v3.1, Zosma05g25390.v3.1, Zosma06g00630.v3.1 ... Zosma06g11380.v3.1