HalophFGD

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Basic Information
Locus ID: Ag5G00877
Species & Taxonomic ID: Apium graveolens & 4045
Genome Assembly: GCA_009905375.1
Description: PolyA polymerase
Maps and Mapping Data
Chromosome Start End Strand ID
chr5 42345955 42351709 - Ag5G00877
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
5.36 79,219.00 Da 50.04 77.40 -0.46
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
CDD cd05402 NT_PAP_TUTase 51 206 1.82241E-28 -
Pfam PF04926 Poly(A) polymerase predicted RNA binding domain 420 491 7.0E-6 IPR007010
Pfam PF01909 Nucleotidyltransferase domain 82 161 3.1E-9 IPR002934
Pfam PF04928 Poly(A) polymerase central domain 12 356 3.0E-105 IPR007012
Pfam PF04926 Poly(A) polymerase predicted RNA binding domain 359 417 1.0E-9 IPR007010
SUPERFAMILY SSF55003 PAP/Archaeal CCA-adding enzyme, C-terminal domain 359 484 5.89E-34 IPR011068
SUPERFAMILY SSF81301 Nucleotidyltransferase 9 205 2.29E-48 IPR043519
SUPERFAMILY SSF81631 PAP/OAS1 substrate-binding domain 207 356 9.16E-63 -
Gene3D G3DSA:3.30.70.590 Poly(A) polymerase predicted RNA binding domain 359 474 7.3E-26 -
Gene3D G3DSA:3.30.460.10 Beta Polymerase, domain 2 44 200 1.3E-151 IPR043519
Gene3D G3DSA:1.10.1410.10 - 12 354 1.3E-151 -
MobiDBLite mobidb-lite consensus disorder prediction 631 660 - -
MobiDBLite mobidb-lite consensus disorder prediction 549 569 - -
MobiDBLite mobidb-lite consensus disorder prediction 485 573 - -
MobiDBLite mobidb-lite consensus disorder prediction 529 547 - -
MobiDBLite mobidb-lite consensus disorder prediction 513 528 - -
MobiDBLite mobidb-lite consensus disorder prediction 631 694 - -
Gene Ontology
Biological Process:
GO:0031123 (RNA 3'-end processing)
Molecular Function:
GO:0003723 (RNA binding) GO:0016779 (nucleotidyltransferase activity) GO:1990817 (poly(A) RNA polymerase activity)
KEGG Pathway
KO Term:
K14376 (poly(A) polymerase [EC:2.7.7.19])
Pathway:
ko03015 (mRNA surveillance pathway) map03015 (mRNA surveillance pathway)
Best hit
Source Best Hit ID Description E-value
TAIR AT4G32850.7 nuclear poly(a) polymerase. Encodes a nuclear poly(A) polymerase. Located in the nucleus. 0
RefSeq XP_017218516.1 PREDICTED: nuclear poly(A) polymerase 4-like [Daucus carota subsp. sativus] 0
Swiss-Prot Q8VYW1 Nuclear poly(A) polymerase 4 OS=Arabidopsis thaliana OX=3702 GN=PAPS4 PE=1 SV=1 0
TrEMBL A0A161ZRW5 polynucleotide adenylyltransferase OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_026355 PE=3 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
PRJNA723697SRX1069225254.461472Shengqin NO.2seedS1-1S1-1initial formation stage (S1)
PRJNA723697SRX1069225441.079788Shengqin NO.2seedS1-3S1-3initial formation stage (S1)
PRJNA723697SRX1069225548.487453Shengqin NO.2seedS3-1S3-1middle development stage (S3)
PRJNA723697SRX1069225646.055065Shengqin NO.2seedS3-2S3-2middle development stage (S3)
PRJNA723697SRX1069225750.953354Shengqin NO.2seedS3-3S3-3middle development stage (S3)
PRJNA723697SRX1069225879.181435Shengqin NO.2seedS5-1S5-1maturation stage (S5)
PRJNA723697SRX1069225958.491421Shengqin NO.2seedS5-2S5-2maturation stage (S5)
PRJNA723697SRX1069226074.303192Shengqin NO.2seedS5-3S5-3maturation stage (S5)
PRJNA884666SRX1772927250.160446celeryantherW99A-r1male sterile line 
PRJNA884666SRX1772927351.697422celeryantherW99A-r2male sterile line 
PRJNA884666SRX1772927449.215481celeryantherW99A-r3male sterile line 
PRJNA884666SRX1772927548.937256celeryantherW99B-r1maintainer line
PRJNA884666SRX1772927651.464603celeryantherW99B-r2maintainer line
PRJNA884666SRX1772927746.637383celeryantherW99B-r3maintainer line
PRJNA884180SRX1774388957.772038var. secalinum YablochnycollenchymaCol_S1_rep1-1
PRJNA884180SRX1774805679.782326var. secalinum YablochnycollenchymaCol_S1_rep3biological replicate 3
PRJNA884180SRX1774805731.245789var. secalinum YablochnycollenchymaCol_S1_rep4biological replicate 4
PRJNA884180SRX1774867836.964371var. secalinum YablochnyparenchymaPar_S1_rep1Biological replicate 1
PRJNA884180SRX1774867942.278797var. secalinum YablochnyparenchymaPar_S1_rep2Biological replicate 2
PRJNA884180SRX1774868047.410667var. secalinum YablochnyparenchymaPar_S1_rep3Biological replicate 3
PRJNA884180SRX1774868136.846714var. secalinum YablochnyparenchymaPar_S1_rep4Biological replicate 4
PRJNA884180SRX1774889839.362843var. secalinum Yablochnyvascular bundleVas_S1_rep1Biological replicate 1
PRJNA884180SRX1774889939.366272var. secalinum Yablochnyvascular bundleVas_S1_rep2Biological replicate 2
PRJNA884180SRX1774890040.567284var. secalinum Yablochnyvascular bundleVas_S1_rep3Biological replicate 3
PRJNA884180SRX1774890143.362041var. secalinum Yablochnyvascular bundleVas_S1_rep4Biological replicate 4
PRJNA884180SRX1774912930.025885var. secalinum Yablochnypart of the celery petiole without collenchyma strandsCollenchyma-free_S1_rep1Biological replicate 1
PRJNA884180SRX1774913028.332014var. secalinum Yablochnypart of the celery petiole without collenchyma strandsCollenchyma-free_S1_rep2Biological replicate 2
PRJNA884180SRX1774913126.489702var. secalinum Yablochnypart of the celery petiole without collenchyma strandsCollenchyma-free_S1_rep3Biological replicate 3
PRJNA884180SRX1774913227.850849var. secalinum Yablochnypart of the celery petiole without collenchyma strandsCollenchyma-free_S1_rep4Biological replicate 4
PRJNA1124269SRX2493641112.44209leafCK1replicate=biological replicate1
PRJNA1124269SRX2493641218.485182leafCK2replicate=biological replicate2
PRJNA1124269SRX2493641312.999106leafCK3replicate=biological replicate3
PRJNA1124269SRX2493641427.571131leafD1replicate=biological replicate1
PRJNA1124269SRX2493641523.150806leafD2replicate=biological replicate2
PRJNA1124269SRX2493641622.281063leafD3replicate=biological replicate3
PRJNA1124269SRX2493641717.833605leafMD1replicate=biological replicate1
PRJNA1124269SRX2493641812.505572leafMD2replicate=biological replicate2
PRJNA1124269SRX2493641914.067539leafMD3replicate=biological replicate3
PRJNA387092SRX283330915.26095shanghaihuangxinleafleaves between 0.5 and 1 cm in breadth, folded;stage 2
PRJNA387092SRX28333218.316574shanghaihuangxinleafleaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sionstage 5
PRJNA387092SRX28333237.632746shanghaihuangxinleafleaves >3 cm, unfolded, with clearstem extensionstage 7
PRJNA543957SRX587959858.568871Zhangzhou lvqingstemSe3100 ppm Na2SeO4
PRJNA543957SRX587959984.541649Zhangzhou lvqingstemSe2100 ppm Na2SeO4
PRJNA543957SRX587960080.439606Zhangzhou lvqingstemMock2mock
PRJNA543957SRX587960188.808861Zhangzhou lvqingstemMock1mock
PRJNA543957SRX587960247.491276Zhangzhou lvqingstemSe1100 ppm Na2SeO4
PRJNA543957SRX587960369.329109Zhangzhou lvqingstemMock3mock
PRJNA609149SRX781591759.140949Jinnan Shiqinflower budearly flower budearly flower bud
PRJNA609149SRX781591858.350262Jinnan Shiqinflower budmiddle flower budmiddle flower bud
PRJNA609149SRX781591960.119396Jinnan Shiqinflower budearly flowering periodearly flowering period
Network
🔍 Co-expression Network
🔍 Protein-Protein Interaction Network
Orthology
Family Species Count Orthologous Genes
Acanthaceae Avicennia marina 7 jg18103, jg25283, jg25284, jg28122, jg469, jg5222, jg7289
Aizoaceae Mesembryanthemum crystallinum 5 gene_13210, gene_14141, gene_15885, gene_18528, gene_26095
Amaranthaceae Atriplex hortensis 6 Ah011036, Ah014051, Ah019288, Ah021154, Ah022207, Ah035065
Amaranthaceae Beta vulgaris 4 BVRB_2g032820, BVRB_3g054560, BVRB_3g056860, BVRB_3g063260
Amaranthaceae Salicornia bigelovii 9 Sbi_jg11293, Sbi_jg15275, Sbi_jg20911, Sbi_jg22873 ...
Sbi_jg46258, Sbi_jg56085, Sbi_jg58896, Sbi_jg63713, Sbi_jg63714
Amaranthaceae Salicornia europaea 5 Seu_jg16736, Seu_jg20590, Seu_jg23180, Seu_jg25358 ...
Seu_jg26573
Amaranthaceae Suaeda aralocaspica 4 GOSA_00005379, GOSA_00006266, GOSA_00012970, GOSA_00018165
Amaranthaceae Suaeda glauca 12 Sgl01647, Sgl01668, Sgl02301, Sgl06821, Sgl07453, Sgl56272 ...
Sgl61781, Sgl62290, Sgl66837, Sgl71108, Sgl74681, Sgl74687
Amaranthaceae Chenopodium album 13 gene:ENSEOMG00000003897, gene:ENSEOMG00000014834 ...
gene:ENSEOMG00000015256, gene:ENSEOMG00000019205, gene:ENSEOMG00000022646, gene:ENSEOMG00000024898, gene:ENSEOMG00000031681, gene:ENSEOMG00000037384, gene:ENSEOMG00000044604, gene:ENSEOMG00000045218, gene:ENSEOMG00000049574, gene:ENSEOMG00000049896, gene:ENSEOMG00000052335
Amaranthaceae Chenopodium quinoa 11 CQ.Regalona.r1.2AG0015010, CQ.Regalona.r1.2BG0017110 ...
CQ.Regalona.r1.3AG0023250, CQ.Regalona.r1.3BG0000130, CQ.Regalona.r1.3BG0023980, CQ.Regalona.r1.4BG0012610, CQ.Regalona.r1.6AG0001750, CQ.Regalona.r1.6BG0001840, CQ.Regalona.r1.6BG0011950, CQ.Regalona.r1.9AG0012120, CQ.Regalona.r1.9BG0010300
Anacardiaceae Pistacia vera 5 pistato.v30123110, pistato.v30147090, pistato.v30147100 ...
pistato.v30232830, pistato.v30254140
Apiaceae Apium graveolens 4 Ag3G00966, Ag5G00877, Ag6G01436, Ag9G00520
Arecaceae Cocos nucifera 6 COCNU_02G001080, COCNU_03G009580, COCNU_03G014690 ...
COCNU_04G011360, COCNU_16G004790, scaffold005650G000020
Arecaceae Phoenix dactylifera 5 gene-LOC103696079, gene-LOC103696098, gene-LOC103709667 ...
gene-LOC103710229, gene-LOC103713411
Asparagaceae Asparagus officinalis 6 AsparagusV1_01.2835.V1.1, AsparagusV1_05.1718.V1.1 ...
AsparagusV1_05.202.V1.1, AsparagusV1_05.2677.V1.1, AsparagusV1_08.2370.V1.1, AsparagusV1_08.2959.V1.1
Asteraceae Flaveria trinervia 7 Ftri10G11922, Ftri16G06532, Ftri18G07415, Ftri1G05527 ...
Ftri2G02531, Ftri4G17254, Ftri7G27255
Brassicaceae Arabidopsis thaliana 5 AT1G17980.1, AT2G25850.2, AT3G06560.1, AT4G32850.8 ...
AT5G02670.1
Brassicaceae Eutrema salsugineum 3 Thhalv10001908m.g.v1.0, Thhalv10006945m.g.v1.0 ...
Thhalv10024486m.g.v1.0
Brassicaceae Schrenkiella parvula 6 Sp1g16040.v2.2, Sp2g12720.v2.2, Sp2g21980.v2.2 ...
Sp3g05500.v2.2, Sp4g05670.v2.2, Sp7g30620.v2.2
Brassicaceae Brassica nigra 6 BniB01g017610.2N, BniB01g057100.2N, BniB02g064620.2N ...
BniB03g007400.2N, BniB03g027850.2N, BniB05g005180.2N
Casuarinaceae Casuarina equisetifolia 11 Ceq02G1251, Ceq02G1252, Ceq03G2454, Ceq04G0854, Ceq04G0855 ...
Ceq04G1101, Ceq04G1102, Ceq04G2062, Ceq05G0356, Ceq09G1005, Ceq09G1013
Casuarinaceae Casuarina glauca 16 Cgl02G1292, Cgl03G2598, Cgl04G0960, Cgl04G0966, Cgl04G0967 ...
Cgl04G0970, Cgl04G0972, Cgl04G1247, Cgl04G1257, Cgl04G1262, Cgl04G1269, Cgl04G1878, Cgl04G2256, Cgl05G0372, Cgl09G1103, Cgl09G1105
Cymodoceaceae Cymodocea nodosa 2 gene.Cymno07g05390, gene.Cymno11g02300
Dunaliellaceae Dunaliella salina 1 Dusal.1100s00001.v1.0
Hydrocharitaceae Thalassia testudinum 3 gene.Thate02g34380, gene.Thate03g00080, gene.Thate07g16850
Nitrariaceae Nitraria sibirica 4 evm.TU.LG01.269, evm.TU.LG07.841, evm.TU.LG10.288 ...
evm.TU.LG11.1164
Plantaginaceae Plantago ovata 7 Pov_00013927, Pov_00013928, Pov_00022565, Pov_00025752 ...
Pov_00033602, Pov_00036582, Pov_00040323
Plumbaginaceae Limonium bicolor 2 Lb3G19368, Lb4G26322
Poaceae Echinochloa crus-galli 24 AH01.3846, AH03.3936, AH03.4111, AH06.2013, AH07.657 ...
AH07.913, AH09.2101, BH01.4188, BH01.4189, BH03.4226, BH03.4446, BH06.1843, BH07.1034, BH07.3197, BH07.778, BH09.2266, CH01.1569, CH01.4476, CH06.2041, CH07.268, CH07.67, CH07.799, CH08.1147, CH09.2411
Poaceae Eleusine coracana subsp. coracana 10 gene-QOZ80_2AG0106870, gene-QOZ80_2BG0160460 ...
gene-QOZ80_3AG0238270, gene-QOZ80_3BG0282200, gene-QOZ80_3BG0289790, gene-QOZ80_5AG0378260, gene-QOZ80_5BG0425350, gene-QOZ80_6AG0542850, gene-QOZ80_6BG0496070, gene-QOZ80_7BG0613390
Poaceae Hordeum vulgare 9 HORVU.MOREX.r3.2HG0110140.1, HORVU.MOREX.r3.4HG0340660.1 ...
HORVU.MOREX.r3.2HG0172810.1.CDS1, HORVU.MOREX.r3.2HG0196750.1.CDS1, HORVU.MOREX.r3.2HG0196810.1.CDS1, HORVU.MOREX.r3.4HG0343100.1.CDS1, HORVU.MOREX.r3.4HG0381380.1, HORVU.MOREX.r3.6HG0581010.1, HORVU.MOREX.r3.7HG0717970.1
Poaceae Lolium multiflorum 7 gene-QYE76_014011, gene-QYE76_021773, gene-QYE76_034453 ...
gene-QYE76_045837, gene-QYE76_050331, gene-QYE76_059189, gene-QYE76_062106
Poaceae Oryza coarctata 10 Oco03G006060, Oco06G014570, Oco07G014390, Oco08G013860 ...
Oco11G008240, Oco11G011140, Oco12G008270, Oco12G011250, Oco13G016400, Oco14G017220
Poaceae Oryza sativa 7 LOC_Os01g50730.1, LOC_Os02g13400.2, LOC_Os03g19920.1 ...
LOC_Os04g49870.1, LOC_Os06g21470.1, LOC_Os06g36360.2, LOC_Os07g48890.1
Poaceae Paspalum vaginatum 6 gene-BS78_01G134900, gene-BS78_01G374200 ...
gene-BS78_02G394900, gene-BS78_04G094000, gene-BS78_06G207200, gene-BS78_10G165600
Poaceae Puccinellia tenuiflora 10 Pt_Chr0102598, Pt_Chr0107068, Pt_Chr0107533, Pt_Chr0206344 ...
Pt_Chr0301572, Pt_Chr0305374, Pt_Chr0306571, Pt_Chr0400442, Pt_Chr0400453, Pt_Chr0603516
Poaceae Sporobolus alterniflorus 15 Chr01G022420, Chr01G033150, Chr02G028950, Chr05G006610 ...
Chr06G032430, Chr0G009930, Chr10G016410, Chr11G006030, Chr12G006430, Chr15G023830, Chr23G017310, Chr24G012050, Chr26G002540, Chr26G014220, Chr28G013470
Poaceae Thinopyrum elongatum 12 Tel2E01G162800, Tel2E01G209300, Tel2E01G314500 ...
Tel2E01G563800, Tel2E01G564000, Tel2E01G767300, Tel4E01G110800, Tel4E01G325200, Tel5E01G176000, Tel5E01G176100, Tel6E01G385700, Tel7E01G625500
Poaceae Triticum dicoccoides 18 gene_TRIDC1BG066940, gene_TRIDC2AG008160 ...
gene_TRIDC2AG011180, gene_TRIDC2AG047070, gene_TRIDC2AG064480, gene_TRIDC2BG013720, gene_TRIDC2BG049620, gene_TRIDC2BG068780, gene_TRIDC2BG068810, gene_TRIDC4AG016700, gene_TRIDC4AG038820, gene_TRIDC4BG010480, gene_TRIDC4BG034140, gene_TRIDC5AG013730, gene_TRIDC6AG028610, gene_TRIDC6BG035050, gene_TRIDC7AG049910, gene_TRIDC7BG043880
Poaceae Triticum aestivum 27 TraesCS2A02G073200.1, TraesCS2A02G096500.1 ...
TraesCS2A02G342300.1.cds1, TraesCS2A02G451700.1.cds1, TraesCS2A02G451800.1.cds1, TraesCS2B02G112000.1, TraesCS2B02G340000.1.cds1, TraesCS2B02G473300.1.cds1, TraesCS2B02G473400.1.cds1, TraesCS2D02G095000.1, TraesCS2D02G319900.1.cds1, TraesCS2D02G320700.1.cds1, TraesCS2D02G451500.1.cds1, TraesCS3D02G006700.1, TraesCS4A02G123900.1, TraesCS4A02G246800.1, TraesCS4B02G068100.1, TraesCS4B02G180500.1, TraesCS4D02G067100.1, TraesCS4D02G182000.1, TraesCS6A02G191200.1, TraesCS6B02G219800.3, TraesCS6D02G174400.1, TraesCS7A02G357100.1, TraesCS7B02G270600.4, TraesCS7D02G365600.4, TraesCSU02G155200.1.cds1
Poaceae Zea mays 19 Zm00001eb015030_P004, Zm00001eb034770_P001 ...
Zm00001eb052460_P002, Zm00001eb072530_P001, Zm00001eb104080_P001, Zm00001eb126480_P001, Zm00001eb161150_P001, Zm00001eb161240_P001, Zm00001eb176100_P001, Zm00001eb205010_P001, Zm00001eb217900_P001, Zm00001eb237990_P001, Zm00001eb277450_P002, Zm00001eb291230_P001, Zm00001eb293140_P002, Zm00001eb331120_P001, Zm00001eb355230_P001, Zm00001eb384370_P005, Zm00001eb395840_P001
Poaceae Zoysia japonica 7 nbis-gene-10223, nbis-gene-1811, nbis-gene-34275 ...
nbis-gene-41196, nbis-gene-42112, nbis-gene-53, nbis-gene-55090
Poaceae Zoysia macrostachya 6 Zma_g1347, Zma_g15445, Zma_g28066, Zma_g30698, Zma_g32942 ...
Zma_g7104
Portulacaceae Portulaca oleracea 13 evm.TU.LG01.2271, evm.TU.LG05.1362, evm.TU.LG07.1510 ...
evm.TU.LG07.1640, evm.TU.LG07.726, evm.TU.LG11.1297, evm.TU.LG13.760, evm.TU.LG13.761, evm.TU.LG14.1444, evm.TU.LG15.1600, evm.TU.LG15.211, evm.TU.LG21.440, evm.TU.LG21.441
Posidoniaceae Posidonia oceanica 6 gene.Posoc03g21910, gene.Posoc03g21920, gene.Posoc03g21930 ...
gene.Posoc04g04190, gene.Posoc06g21880, gene.Posoc08g12520
Rhizophoraceae Bruguiera sexangula 4 evm.TU.Scaffold_10_RagTag.1310 ...
evm.TU.Scaffold_11_RagTag.705, evm.TU.Scaffold_18_RagTag.601, evm.TU.Scaffold_18_RagTag.602
Rhizophoraceae Carallia pectinifolia 4 nbisL1-mrna-13740, nbisL1-mrna-13743, nbisL1-mrna-14316 ...
nbisL1-mrna-7043
Rhizophoraceae Ceriops tagal 2 nbisL1-mrna-4313, nbisL1-mrna-8048
Rhizophoraceae Ceriops zippeliana 2 nbisL1-mrna-12315, nbisL1-mrna-8803
Rhizophoraceae Kandelia candel 3 evm.TU.utg000004l.97, evm.TU.utg000005l.11 ...
evm.TU.utg000023l.105
Rhizophoraceae Kandelia obovata 4 Maker00001280, Maker00004213, Maker00008647, Maker00018994
Rhizophoraceae Rhizophora apiculata 3 nbisL1-mrna-16421, nbisL1-mrna-7387, nbisL1-mrna-959
Rhizophoraceae Rhizophora mangle 3 nbisL1-mrna-17960, nbisL1-mrna-21352, nbisL1-mrna-8375
Salicaceae Populus euphratica 5 populus_peu04985, populus_peu06865, populus_peu12718 ...
populus_peu28459, populus_peu28460
Solanaceae Lycium barbarum 6 gene-LOC132602677, gene-LOC132604219, gene-LOC132626743 ...
gene-LOC132635844, gene-LOC132641679, gene-LOC132645829
Solanaceae Solanum chilense 4 SOLCI001025900, SOLCI001548900, SOLCI002706700 ...
SOLCI005823800
Solanaceae Solanum pennellii 6 gene-LOC107005807, gene-LOC107007104, gene-LOC107007813 ...
gene-LOC107020467, gene-LOC107023221, gene-LOC107027905
Tamaricaceae Reaumuria soongarica 3 gene_10058, gene_12468, gene_3126
Tamaricaceae Tamarix chinensis 3 TC01G2577, TC08G1902, TC12G1845
Zosteraceae Zostera marina 2 Zosma03g03770.v3.1, Zosma03g24430.v3.1
Maintained by Hengyu Yan - College of Agronomy - Qingdao Agricultural University © 2024 All Rights Reserved.