Basic Information
Locus ID:
Ag5G00834
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Ran-specific GTPase-activating protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 38251127 | 38254732 | - | Ag5G00834 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.98 | 48,678.83 Da | 33.53 | 58.11 | -0.78 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd13169 | RanBD_NUP50_plant | 324 | 438 | 5.9941E-59 | - |
| Pfam | PF00638 | RanBP1 domain | 322 | 438 | 4.6E-17 | IPR000156 |
| Pfam | PF08911 | NUP50 (Nucleoporin 50 kDa) | 13 | 76 | 1.5E-15 | IPR015007 |
| SUPERFAMILY | SSF50729 | PH domain-like | 317 | 440 | 3.87E-31 | - |
| Gene3D | G3DSA:2.30.29.30 | - | 252 | 439 | 1.9E-36 | IPR011993 |
| SMART | SM00160 | ranbd_3 | 313 | 438 | 7.3E-13 | IPR000156 |
| ProSiteProfiles | PS50196 | Ran binding domain type 1 profile. | 318 | 444 | 17.885019 | IPR000156 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 206 | 241 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 191 | 205 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 39 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 59 | 78 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 59 | 80 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 107 | 128 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 95 | 244 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 140 | 190 | - | - |
Gene Ontology
Biological Process:
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G52380.1 | NUP50 (Nucleoporin 50 kDa) protein. | 0 |
| RefSeq | XP_017219003.1 | PREDICTED: nuclear pore complex protein NUP50A [Daucus carota subsp. sativus] | 0 |
| Q9C829 | Nuclear pore complex protein NUP50A OS=Arabidopsis thaliana OX=3702 GN=NUP50A PE=1 SV=1 | 0 | |
| TrEMBL | A0A164UQY4 | RanBD1 domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_026310 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 72.397789 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 53.084549 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 66.998802 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 66.67244 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 68.497253 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 83.130524 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 72.996582 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 81.747101 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 69.767578 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 67.645226 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 70.822807 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 75.256859 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 71.297066 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 67.222244 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 31.031185 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 30.4603 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 35.226227 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 34.463745 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 28.455923 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 38.800423 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 40.384312 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 42.840496 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 43.554989 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 44.700405 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 43.242508 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 34.7076 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 38.699375 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 35.933716 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 37.46056 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 38.107014 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 42.552219 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 40.761051 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 44.352211 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 40.169189 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 41.105141 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 47.564384 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 46.055061 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 49.538288 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 45.630871 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 24.464664 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 18.512032 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 59.013454 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 39.697422 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 117.533195 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 76.324432 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 61.358631 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 47.953259 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 49.675358 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 44.546734 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 45.095634 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg18181 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_26154 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah010675 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g220460 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg11468, Sbi_jg46401 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg20724 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00005263 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl55889, Sgl61079 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000019614, gene:ENSEOMG00000038857 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7BG0010820, CQ.Regalona.r1.9AG0013810 |
| Apiaceae | Apium graveolens | 3 | Ag5G00834, Ag6G01455, Ag6G01456 |
| Arecaceae | Cocos nucifera | 2 | COCNU_02G000490, COCNU_03G016050 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103704584, gene-LOC103709734, gene-LOC120111515 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_01.2021.V1.1, AsparagusV1_06.1159.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri10G31180, Ftri4G19743 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G52380.1, AT3G15970.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10011504m.g.v1.0, Thhalv10020773m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g38990.v2.2, Sp3g14320.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB04g057400.2N, BniB06g028360.2N, BniB07g028590.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G0227 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G0236 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno10g08560, gene.Cymno14g07250 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0012s00025.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate07g15230 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 3 | nbisL1-mrna-3211, nbisL1-mrna-4532, nbisL1-mrna-7407 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00015428, Pov_00024989 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb4G23405 |
| Poaceae | Echinochloa crus-galli | 6 | AH03.322, AH05.2851, BH03.402, BH05.2900, CH03.470 ... |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_5AG0376770 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.1HG0061740.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_012881, gene-QYE76_012938 |
| Poaceae | Oryza coarctata | 2 | Oco09G007220, Oco10G007480 |
| Poaceae | Oryza sativa | 1 | LOC_Os05g28190.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G317100 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr12G015370, Chr18G006070, Chr22G010730 |
| Poaceae | Thinopyrum elongatum | 2 | Tel1E01G379000, Tel7E01G753600 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC1AG033810, gene_TRIDC1BG039190 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS1A02G224800.1, TraesCS1B02G238000.1.cds1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb155830_P002, Zm00001eb360880_P001 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g26668, Zma_g27967 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG06.1187, evm.TU.LG11.543 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g15760 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_10_RagTag.1254 ... |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-27856, nbisL1-mrna-6972 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-10714, nbisL1-mrna-14797 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-16988, nbisL1-mrna-7904 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000023l.76, add.evm.TU.utg000033l.186 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00014756, Maker00017488 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-23404 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-18020, nbisL1-mrna-21261 |
| Salicaceae | Populus euphratica | 3 | populus_peu02778, populus_peu33695, populus_peu33723 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132598472, gene-LOC132633345 |
| Solanaceae | Solanum chilense | 2 | SOLCI001215800, SOLCI001859600 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107014818, gene-LOC107021139 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.19081_chr07_- |
| Tamaricaceae | Tamarix chinensis | 2 | TC08G2086, TC10G1951 |
| Zosteraceae | Zostera marina | 1 | Zosma01g24890.v3.1 |