Basic Information
Locus ID:
Ag5G00786
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Pentatricopeptide repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 34167307 | 34169655 | + | Ag5G00786 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.31 | 77,557.82 Da | 36.63 | 97.14 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13812 | Pentatricopeptide repeat domain | 236 | 284 | 0.0037 | IPR002885 |
| Pfam | PF13812 | Pentatricopeptide repeat domain | 538 | 597 | 3.5E-7 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 205 | 233 | 0.44 | IPR002885 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 398 | 512 | 1.4E-9 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 103 | 379 | 7.4E-20 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 513 | 654 | 5.0E-27 | IPR011990 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 587 | 618 | 1.2E-4 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 519 | 551 | 7.1E-7 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 585 | 619 | 10.248873 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 237 | 271 | 8.801982 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 515 | 549 | 9.63504 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 550 | 584 | 9.328124 | IPR002885 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G66631.1 | Tetratricopeptide repeat (TPR)-like superfamily protein. | 0 |
| RefSeq | XP_017216750.1 | PREDICTED: pentatricopeptide repeat-containing protein At5g66631 [Daucus carota subsp. sativus] | 0 |
| B3H4P1 | Pentatricopeptide repeat-containing protein At5g66631 OS=Arabidopsis thaliana OX=3702 GN=At5g66631 PE=2 SV=1 | 0 | |
| TrEMBL | A0A164UPP4 | Pentatricopeptide repeat-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_026261 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 1.626669 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 1.158323 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 0.856738 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 0.899576 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 0.794768 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 0.956486 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 1.291978 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 1.076605 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 1.416241 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 1.78056 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 2.746848 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 1.545613 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 1.853724 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 1.017143 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 0.287712 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 0.628891 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 0.541014 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 0.178056 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 0.604685 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 0.624685 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 0.756802 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 0.749342 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 0.476614 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 0.972234 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 1.692329 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 0.621605 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 0.318243 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 0.650481 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 0.627605 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0.074924 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0.168442 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0.205982 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0.830349 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 0.771655 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0.438431 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0.459277 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0.201404 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.384534 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 1.291786 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0.582564 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0.170402 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0.410573 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0.414614 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 0.614432 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 0.353883 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0.69279 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 0.602828 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 2.124871 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 1.879006 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 1.210677 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg19715 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_24210 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah026614 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g138050 |
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg5904 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg28090 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl34667, Sgl40090 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000005430, gene:ENSEOMG00000024647 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0018220, CQ.Regalona.r1.6BG0019300 |
| Apiaceae | Apium graveolens | 1 | Ag5G00786 |
| Arecaceae | Cocos nucifera | 1 | COCNU_09G009340 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103711858 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.1996.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri18G03992 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G66631.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10005592m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g30070.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB06g015460.2N, BniB06g015470.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G0719 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G0728 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno02g07150 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g00560 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-9994 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.2262 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00024048 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb5G27941 |
| Poaceae | Echinochloa crus-galli | 2 | AH02.526, CH02.605 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0010990, gene-QOZ80_1BG0059530 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0234530.1.CDS1 |
| Poaceae | Lolium multiflorum | 4 | gene-QYE76_049898, gene-QYE76_049899, gene-QYE76_050008 ... |
| Poaceae | Oryza coarctata | 2 | Oco01G002610, Oco02G002660 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g07340.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G052600 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0200439 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr02G019360, Chr05G010350 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G171000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG011620, gene_TRIDC3BG015670 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G096700.1.cds1, TraesCS3B02G112500.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb123240_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-13097 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g7659 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG05.224 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc02g16130, gene.Posoc05g19490 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_3_RagTag.287 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-336, nbisL1-mrna-538 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-15533 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-6019 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000019l.444 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00012818 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-19355 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-13759, nbisL1-mrna-2291 |
| Salicaceae | Populus euphratica | 3 | populus_peu14289, populus_peu14301, populus_peu37521 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132623601 |
| Solanaceae | Solanum chilense | 1 | SOLCI002660400 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107009372 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_950 |
| Tamaricaceae | Tamarix chinensis | 1 | TC04G2094 |
| Zosteraceae | Zostera marina | 1 | Zosma04g25960.v3.1 |