Basic Information
Locus ID:
Ag5G00773
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Methyltransferase-like protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 32834782 | 32838033 | + | Ag5G00773 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.41 | 23,886.10 Da | 33.95 | 94.00 | -0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02440 | AdoMet_MTases | 49 | 150 | 7.58599E-13 | - |
| Pfam | PF08241 | Methyltransferase domain | 51 | 149 | 1.4E-21 | IPR013216 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 17 | 204 | 2.73E-31 | IPR029063 |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 15 | 210 | 5.2E-29 | - |
| Coils | Coil | Coil | 18 | 38 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G69523.1 | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein. | 0 |
| RefSeq | XP_017216318.1 | PREDICTED: methyltransferase-like protein 7A isoform X2 [Daucus carota subsp. sativus] | 0 |
| Q9H8H3 | Thiol S-methyltransferase TMT1A OS=Homo sapiens OX=9606 GN=TMT1A PE=1 SV=1 | 0 | |
| TrEMBL | A0A164UPJ5 | pyruvate dehydrogenase (acetyl-transferring) OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_026253 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 1.214692 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 1.274959 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 1.923341 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 1.674585 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 1.028656 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 1.776608 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 1.768568 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 3.906707 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 1.819001 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 1.171643 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 1.202316 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 2.267509 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 2.661002 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 2.026196 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 3.533673 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 4.212465 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 6.311308 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 6.784091 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 7.915373 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 4.445906 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 6.177984 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 6.189841 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 6.141294 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 7.761389 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 7.603527 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 6.860062 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 7.592964 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 8.985065 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 7.227108 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 3.307946 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 2.41456 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 2.148043 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 5.915708 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 4.309956 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 5.688975 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 5.246506 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 4.253457 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 3.328582 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 8.052825 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 8.430458 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 9.337032 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0.59448 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0.565589 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 5.844879 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 5.247579 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0.707298 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 3.615266 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 3.647086 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 2.493253 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 4.989789 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg9326 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_3799 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah013209 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g153590 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg42255, Sbi_jg44841 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg27278 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00002128 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl35633, Sgl40971 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000002681, gene:ENSEOMG00000013490 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.6BG0000810 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30027560 |
| Apiaceae | Apium graveolens | 2 | Ag3G01962, Ag5G00773 |
| Arecaceae | Cocos nucifera | 2 | COCNU_05G007610, COCNU_05G007620 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103702896, gene-LOC120108097 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_08.2519.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri13G17633 |
| Brassicaceae | Arabidopsis thaliana | 3 | AT1G69520.1, AT1G69523.1, AT1G69526.2 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10018913m.g.v1.0, Thhalv10019188m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 4 | Sp5g24610.v2.2, Sp5g24620.v2.2, Sp5g24630.v2.2 ... |
| Brassicaceae | Brassica nigra | 7 | BniB03g041410.2N, BniB03g046890.2N, BniB03g046940.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq07G0146 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl07G0136 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno04g10250, gene.Cymno04g10260 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0332s00005.v1.0, Dusal.0332s00009.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 3 | gene.Thate06g08020, gene.Thate06g08030, gene.Thate06g08040 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG03.276, evm.TU.LG03.277 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00015199 |
| Plumbaginaceae | Limonium bicolor | 4 | Lb5G27769, Lb5G27770, Lb6G31720, Lb6G31721 |
| Poaceae | Echinochloa crus-galli | 3 | AH07.3454, BH07.3283, CH07.3333 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_2BG0200900 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0615420.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_024891 |
| Poaceae | Oryza coarctata | 2 | Oco03G021440, Oco04G022070 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g51030.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G276600 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0203337, Pt_Chr0203361 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr09G020330, Chr13G004480 |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G550800 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC6AG046350, gene_TRIDC6BG054030 |
| Poaceae | Triticum aestivum | 3 | TraesCS6A02G308000.1, TraesCS6B02G336700.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb194590_P001, Zm00001eb254460_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-21858 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g17131 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG13.409, evm.TU.LG21.109 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g24510 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_17_RagTag.363 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-22944 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-20454 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-14901 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000013l.260 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00006733 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-7174 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-15724 |
| Salicaceae | Populus euphratica | 1 | populus_peu06737 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132607921 |
| Solanaceae | Solanum chilense | 1 | SOLCI001137900 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107021445 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.29366_chr10_-, gene_13648 |
| Tamaricaceae | Tamarix chinensis | 2 | TC01G3337, TC03G0727 |
| Zosteraceae | Zostera marina | 1 | Zosma02g17290.v3.1 |