Basic Information
Locus ID:
Ag5G00755
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Elongation factor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 30931497 | 30938531 | + | Ag5G00755 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.39 | 67,631.79 Da | 50.89 | 81.28 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00292 | EF1B | 506 | 597 | 2.54242E-40 | IPR014038 |
| Pfam | PF02902 | Ulp1 protease family, C-terminal catalytic domain | 167 | 345 | 8.5E-15 | IPR003653 |
| Pfam | PF00736 | EF-1 guanine nucleotide exchange domain | 510 | 597 | 3.4E-32 | IPR014038 |
| SUPERFAMILY | SSF54984 | eEF-1beta-like | 505 | 597 | 7.59E-30 | IPR036219 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 121 | 336 | 1.18E-26 | IPR038765 |
| SUPERFAMILY | SSF47616 | GST C-terminal domain-like | 371 | 430 | 6.57E-10 | IPR036282 |
| Gene3D | G3DSA:3.30.70.60 | - | 501 | 597 | 4.6E-43 | IPR014717 |
| Gene3D | G3DSA:1.20.1050.130 | - | 366 | 443 | 3.5E-10 | - |
| Gene3D | G3DSA:3.40.395.10 | Adenoviral Proteinase; Chain A | 72 | 337 | 3.9E-29 | - |
| SMART | SM00888 | EF1_GNE_2 | 508 | 597 | 7.1E-37 | IPR014038 |
| ProSiteProfiles | PS50600 | Ubiquitin-like protease family profile. | 105 | 302 | 16.360514 | IPR003653 |
| ProSitePatterns | PS00825 | Elongation factor 1 beta/beta'/delta chain signature 2. | 586 | 597 | - | IPR001326 |
| ProSitePatterns | PS00824 | Elongation factor 1 beta/beta'/delta chain signature 1. | 472 | 480 | - | IPR001326 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 482 | 501 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 34 | 125 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 22 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 37 | 63 | - | - |
| Coils | Coil | Coil | 480 | 500 | - | - |
| Coils | Coil | Coil | 601 | 601 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G30230.1 | Glutathione S-transferase, C-terminal-like;Translation elongation factor EF1B/ribosomal protein S6. | 0 |
| RefSeq | XP_017218175.1 | PREDICTED: uncharacterized protein LOC108195712 [Daucus carota subsp. sativus] | 0 |
| P93447 | Elongation factor 1-delta OS=Spuriopimpinella brachycarpa OX=45043 PE=2 SV=3 | 0 | |
| TrEMBL | A0A164UNT6 | EF1_GNE domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_026222 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 107.408867 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 93.245735 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 92.809357 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 87.334129 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 85.306831 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 85.797096 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 83.503036 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 85.801254 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 50.162048 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 53.531803 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 42.686905 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 51.162689 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 60.468414 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 66.402855 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 33.650845 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 36.978817 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 29.909868 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 42.372246 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 45.451118 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 45.347515 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 51.392853 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 49.56258 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 39.110981 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 44.555397 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 50.980637 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 46.222847 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 34.811825 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 41.94672 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 45.233654 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 70.311813 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 62.358025 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 49.134644 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 48.589912 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 42.794445 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 44.119007 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 40.509846 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 57.280205 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 53.552425 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 32.614689 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 35.497387 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 45.070076 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 30.034405 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 43.926399 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 60.159592 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 51.577984 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 37.988731 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 49.056202 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 71.924217 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 71.851601 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 59.654484 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg1906, jg35630 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_12158, gene_5480 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah019092, Ah037002 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_3g053900, BVRB_4g089880 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg18438, Sbi_jg36854, Sbi_jg38021, Sbi_jg6163 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg15682, Seu_jg4747 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00006206, GOSA_00017375 |
| Amaranthaceae | Suaeda glauca | 12 | Sgl00724, Sgl00847, Sgl04077, Sgl05746, Sgl05801, Sgl09140 ... |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000003644, gene:ENSEOMG00000031522 ... |
| Amaranthaceae | Chenopodium quinoa | 5 | CQ.Regalona.r1.2BG0001610, CQ.Regalona.r1.3BG0001420 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30140720 |
| Apiaceae | Apium graveolens | 3 | Ag4G00559, Ag5G00755, Ag6G00242 |
| Arecaceae | Cocos nucifera | 1 | scaffold007467G000010 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103717170 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_09.274.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri1G20771 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G48480.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10010584m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g13550.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB06g023810.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G1719 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G1895 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno04g04420 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g09920 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG10.1029, evm.TU.LG10.1061 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00014882 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb5G26955 |
| Poaceae | Echinochloa crus-galli | 4 | AH01.2681, AH04.1012, BH04.946, CH04.1098 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_9AG0678400, gene-QOZ80_9BG0702040 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.3HG0319330.1, HORVU.MOREX.r3.4HG0345600.1 |
| Poaceae | Oryza coarctata | 2 | Oco21G003180, Oco22G003980 |
| Poaceae | Oryza sativa | 1 | LOC_Os11g10780.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_05G140400 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0103973, Pt_Chr0704214 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr07G018590, Chr17G010570, Chr31G003450 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G170600 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC3BG065040, gene_TRIDC3BG077270 ... |
| Poaceae | Triticum aestivum | 7 | TraesCS3A02G484200.1, TraesCS3B02G531000.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb168510_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-23314 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g17781 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG02.560, evm.TU.LG03.1160, evm.TU.LG09.2111 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g07460 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.60456.20, evm.TU.Scaffold_11_RagTag.1528 ... |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-12285 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-14230, nbisL1-mrna-2320 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-12672 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000008l.6, evm.TU.utg000010l.179 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00008571 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-2285, nbisL1-mrna-682 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-24242 |
| Salicaceae | Populus euphratica | 2 | populus_peu20519, populus_peu28796 |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132600769, gene-LOC132600771, gene-LOC132623502 |
| Solanaceae | Solanum chilense | 2 | SOLCI001701500, SOLCI005081500 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107003371, gene-LOC107009041 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.18361_chr09_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC11G1158 |
| Zosteraceae | Zostera marina | 1 | Zosma03g15460.v3.1 |