halophFGD

Basic Information

Locus ID: Ag5G00745

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Inactive leucine-rich repeat receptor-like protein kinase

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr5	30311258	30316072	+	Ag5G00745

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.36	82,141.39 Da	35.76	101.00	-0.09

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00069	Protein kinase domain	462	717	3.6E-20	IPR000719
Pfam	PF13855	Leucine rich repeat	259	318	4.4E-7	IPR001611
SUPERFAMILY	SSF52058	L domain-like	99	343	7.48E-39	-
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	442	720	3.32E-42	IPR011009
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	236	365	4.9E-20	IPR032675
Gene3D	G3DSA:3.30.200.20	Phosphorylase Kinase; domain 1	434	543	7.5E-18	-
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	30	235	3.4E-31	IPR032675
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	547	738	4.2E-23	-
ProSiteProfiles	PS50011	Protein kinase domain profile.	460	723	21.078753	IPR000719

Gene Ontology

Biological Process:

GO:0006468 (protein phosphorylation)

Molecular Function:

GO:0004672 (protein kinase activity) GO:0005515 (protein binding) GO:0005524 (ATP binding)

Best hit

Source	Best Hit ID	Description
TAIR	AT5G14210.1	Leucine-rich repeat protein kinase family protein.
RefSeq	XP_017215352.1	PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At3g03770 [Daucus carota subsp. sativus]
Swiss-Prot	Q8LFN2	Probable inactive leucine-rich repeat receptor-like protein kinase At3g03770 OS=Arabidopsis thaliana OX=3702 GN=At3g03770 PE=1 SV=1
TrEMBL	A0A164UNQ5	Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_026219 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	1.157105	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	1.081215	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	0.966103	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	0.629812	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	0.724771	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	0.113692	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	0.222014	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	0.207539	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	8.67889	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	8.300202	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	9.037127	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	6.761221	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	5.412905	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	5.486133	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	32.564564	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	33.50016	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	29.999552	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	34.357277	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	32.108688	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	35.612457	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	30.292538	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	11.273917	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	11.297262	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	12.251006	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	14.170023	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	29.153996	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	29.100155	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	19.292564	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	24.840738	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	3.526552		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	6.108378		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	5.327016		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	1.482802		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	2.791493		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	1.31389		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	6.91433		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	1.752106		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	3.034616		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	15.365937	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	12.810774	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	4.039249	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	5.300295	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	24.448717	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	32.883877	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	35.41909	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	6.320966	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	26.580082	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	8.821576	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	5.695693	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	10.137174	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	4	jg13365, jg17704, jg25627, jg40454
Aizoaceae	Mesembryanthemum crystallinum	1	gene_14019
Amaranthaceae	Atriplex hortensis	1	Ah001919
Amaranthaceae	Salicornia bigelovii	2	Sbi_jg31699, Sbi_jg57608
Amaranthaceae	Salicornia europaea	1	Seu_jg25297
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00025080
Amaranthaceae	Suaeda glauca	2	Sgl54216, Sgl59553
Amaranthaceae	Chenopodium album	3	gene:ENSEOMG00000007890, gene:ENSEOMG00000022294 ... gene:ENSEOMG00000024648
Amaranthaceae	Chenopodium quinoa	2	CQ.Regalona.r1.5AG0016530, CQ.Regalona.r1.5BG0017790
Anacardiaceae	Pistacia vera	2	pistato.v30024360, pistato.v30028210
Apiaceae	Apium graveolens	4	Ag3G01105, Ag4G00710, Ag5G00745, Ag9G00409
Arecaceae	Cocos nucifera	1	scaffold003417G000060
Arecaceae	Phoenix dactylifera	1	gene-LOC103702931
Asparagaceae	Asparagus officinalis	2	AsparagusV1_01.3013.V1.1, AsparagusV1_06.288.V1.1
Asteraceae	Flaveria trinervia	4	Ftri17G30445, Ftri18G28122, Ftri1G15365, Ftri1G32425
Brassicaceae	Arabidopsis thaliana	2	AT5G14210.1, AT5G63410.1
Brassicaceae	Eutrema salsugineum	2	Thhalv10003757m.g.v1.0, Thhalv10012902m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp2g26500.v2.2, Sp6g29820.v2.2, SpUn0049_0010.v2.2
Brassicaceae	Brassica nigra	3	BniB02g048450.2N, BniB07g042210.2N, BniB08g006820.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq04G1686, Ceq08G0188
Casuarinaceae	Casuarina glauca	2	Cgl04G1868, Cgl08G0129
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno08g04890
Dunaliellaceae	Dunaliella salina	1	Dusal.0136s00004.v1.0
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate01g15330, gene.Thate06g10660
Malvaceae	Hibiscus hamabo Siebold & Zucc.	2	nbisL1-mrna-6878, nbisL1-mrna-6879
Nitrariaceae	Nitraria sibirica	1	evm.TU.LG05.165
Plantaginaceae	Plantago ovata	1	Pov_00027785
Plumbaginaceae	Limonium bicolor	4	Lb1G07791, Lb1G07801, Lb2G15063, Lb8G36639
Poaceae	Echinochloa crus-galli	3	AH04.1134, BH04.1108, CH04.1286
Poaceae	Eleusine coracana subsp. coracana	2	gene-QOZ80_9AG0679110, gene-QOZ80_9BG0702900
Poaceae	Hordeum vulgare	1	HORVU.MOREX.r3.4HG0341900.1
Poaceae	Oryza coarctata	2	Oco21G004520, Oco22G005650
Poaceae	Oryza sativa	1	LOC_Os11g20360.2
Poaceae	Paspalum vaginatum	1	gene-BS78_05G127900
Poaceae	Puccinellia tenuiflora	1	Pt_Chr0104320
Poaceae	Sporobolus alterniflorus	2	Chr07G018100, Chr31G004210
Poaceae	Thinopyrum elongatum	1	Tel4E01G121400
Poaceae	Triticum dicoccoides	2	gene_TRIDC4AG037860, gene_TRIDC4BG011680
Poaceae	Triticum aestivum	3	TraesCS4A02G239600.1, TraesCS4B02G075400.1 ... TraesCS4D02G074100.1
Poaceae	Zea mays	1	Zm00001eb167780_P001
Poaceae	Zoysia japonica	1	nbis-gene-35941
Poaceae	Zoysia macrostachya	1	Zma_g17848
Portulacaceae	Portulaca oleracea	1	evm.TU.LG01.2813
Posidoniaceae	Posidonia oceanica	1	gene.Posoc05g15060
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.Scaffold_3_RagTag.2006, evm.TU.Scaffold_4_RagTag.373 ... evm.TU.Scaffold_6_RagTag.46
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-14844, nbisL1-mrna-28997
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-11610, nbisL1-mrna-6811, nbisL1-mrna-7971
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-1938, nbisL1-mrna-3153, nbisL1-mrna-43
Rhizophoraceae	Kandelia candel	3	evm.TU.utg000008l.240, evm.TU.utg000011l.30 ... evm.TU.utg000019l.13
Rhizophoraceae	Kandelia obovata	3	Maker00000612, Maker00001668, Maker00007509
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-11946, nbisL1-mrna-14671
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-1372, nbisL1-mrna-17547
Salicaceae	Populus euphratica	3	populus_peu01211, populus_peu28825, populus_peu30236
Solanaceae	Lycium barbarum	2	gene-LOC132622690, gene-LOC132623272
Solanaceae	Solanum chilense	2	SOLCI000006900, SOLCI006867800
Solanaceae	Solanum pennellii	2	gene-LOC107011604, gene-LOC107011721
Tamaricaceae	Reaumuria soongarica	2	STRG.22457_chr10_-, gene_11156
Tamaricaceae	Tamarix chinensis	2	TC03G0504, TC08G2612
Zosteraceae	Zostera marina	1	Zosma02g00970.v3.1