Basic Information
Locus ID:
Ag5G00742
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Conserved oligomeric Golgi complex subunit
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 30234500 | 30242217 | + | Ag5G00742 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.76 | 85,804.57 Da | 43.76 | 95.06 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF06148 | COG (conserved oligomeric Golgi) complex component, COG2 | 31 | 161 | 2.3E-38 | IPR024602 |
| Pfam | PF12022 | Domain of unknown function (DUF3510) | 594 | 728 | 1.3E-34 | IPR024603 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 690 | 712 | - | - |
| Coils | Coil | Coil | 61 | 81 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G24840.1 | 0 | |
| RefSeq | XP_017219163.1 | PREDICTED: conserved oligomeric Golgi complex subunit 2 [Daucus carota subsp. sativus] | 0 |
| F4JRR1 | Conserved oligomeric Golgi complex subunit 2 OS=Arabidopsis thaliana OX=3702 GN=COG2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2R6PDS5 | Conserved oligomeric Golgi complex subunit 2 OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc29750 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 28.075142 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 19.43399 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 19.005541 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 19.911638 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 19.566969 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 14.447193 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 13.438477 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 10.096837 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 35.782425 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 35.037952 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 38.17886 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 38.560513 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 37.998402 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 28.667049 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 33.618473 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 37.846531 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 36.479836 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 32.366348 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 24.492979 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 29.561609 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 29.378662 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 30.469715 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 33.266144 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 29.521681 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 29.70616 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 30.913916 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 29.280661 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 23.450954 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 33.558208 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 2.777171 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 3.43485 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 3.84932 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 7.706738 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 10.128799 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 8.341881 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 3.649628 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 2.455211 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 3.014228 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 19.864607 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 12.106599 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 6.596119 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 19.025684 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 20.304405 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 18.370144 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 18.066542 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 18.646652 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 22.99754 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 28.715462 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 28.278343 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 27.097939 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg13366 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_19842 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah001899 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g110470 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg31704, Sbi_jg57604 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg25289 |
| Amaranthaceae | Suaeda aralocaspica | 3 | GOSA_00025085, GOSA_00025086, GOSA_00025087 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl54199, Sgl54207, Sgl59544, Sgl59547 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000006094, gene:ENSEOMG00000021081 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0015640, CQ.Regalona.r1.5BG0016820 |
| Anacardiaceae | Pistacia vera | 6 | pistato.v30028130, pistato.v30028140, pistato.v30099270 ... |
| Apiaceae | Apium graveolens | 1 | Ag5G00742 |
| Arecaceae | Cocos nucifera | 2 | COCNU_02G008740, COCNU_11G003040 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103710573 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.1425.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri18G32599 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G24840.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10024490m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp6g25960.v2.2, Sp7g22830.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g081420.2N, BniB08g009180.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G1678 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G1854 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g01730 |
| Dunaliellaceae | Dunaliella salina | 3 | Dusal.0109s00025.v1.0, Dusal.0109s00026.v1.0 ... |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g04970 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG10.1059 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00033442 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb5G27232 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.575, BH01.156, CH09.3355 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0208390, gene-QOZ80_3BG0253470 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0533780.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_056375, gene-QYE76_059951 |
| Poaceae | Oryza coarctata | 2 | Oco05G028860, Oco06G029910 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g63250.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G011300 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0106493, Pt_Chr0403192 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr01G000500, Chr01G003460, Chr12G031920, Chr12G035320 ... |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG050660, gene_TRIDC5BG080190 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G335400.1, TraesCS5B02G549700.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb064480_P002, Zm00001eb210790_P002 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-15648, nbis-gene-16744 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g2371, Zma_g63 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG01.2809, evm.TU.LG21.200 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g03810 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_11_RagTag.1124, evm.TU.Scaffold_4_RagTag.370 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-29001 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-11606 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-1941 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000008l.237 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00000473 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-14674 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-1369 |
| Salicaceae | Populus euphratica | 2 | populus_peu28832, populus_peu30241 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132608837 |
| Solanaceae | Solanum chilense | 1 | SOLCI001248800 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107028694 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_6258 |
| Tamaricaceae | Tamarix chinensis | 1 | TC09G0852 |
| Zosteraceae | Zostera marina | 1 | Zosma01g33960.v3.1 |