Basic Information
Locus ID:
Ag5G00646
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Serine threonine-protein kinase AtPK2 AtPK19-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 23359663 | 23364379 | + | Ag5G00646 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.45 | 52,266.48 Da | 51.77 | 71.91 | -0.59 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00433 | Protein kinase C terminal domain | 414 | 451 | 3.8E-4 | IPR017892 |
| Pfam | PF00069 | Protein kinase domain | 131 | 393 | 3.3E-70 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 129 | 455 | 1.12E-90 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 217 | 412 | 3.1E-121 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 130 | 435 | 3.1E-121 | - |
| SMART | SM00133 | pkinase_C_6 | 394 | 453 | 1.6E-13 | IPR000961 |
| SMART | SM00220 | serkin_6 | 131 | 393 | 3.1E-95 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 131 | 393 | 51.396183 | IPR000719 |
| ProSiteProfiles | PS51285 | AGC-kinase C-terminal domain profile. | 394 | 461 | 12.879486 | IPR000961 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 256 | 268 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 137 | 166 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 34 | 94 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 100 | 115 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 34 | 118 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Pathway:
ko01521 (EGFR tyrosine kinase inhibitor resistance)
map01521 (EGFR tyrosine kinase inhibitor resistance)
ko01522 (Endocrine resistance)
map01522 (Endocrine resistance)
ko04012 (ErbB signaling pathway)
map04012 (ErbB signaling pathway)
ko04066 (HIF-1 signaling pathway)
map04066 (HIF-1 signaling pathway)
ko04140 (Autophagy - animal)
map04140 (Autophagy - animal)
ko04150 (mTOR signaling pathway)
map04150 (mTOR signaling pathway)
ko04151 (PI3K-Akt signaling pathway)
map04151 (PI3K-Akt signaling pathway)
ko04152 (AMPK signaling pathway)
map04152 (AMPK signaling pathway)
ko04211 (Longevity regulating pathway)
map04211 (Longevity regulating pathway)
ko04212 (Longevity regulating pathway - worm)
map04212 (Longevity regulating pathway - worm)
ko04213 (Longevity regulating pathway - multiple species)
map04213 (Longevity regulating pathway - multiple species)
ko04350 (TGF-beta signaling pathway)
map04350 (TGF-beta signaling pathway)
ko04371 (Apelin signaling pathway)
map04371 (Apelin signaling pathway)
map04666 (Fc gamma R-mediated phagocytosis)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G08720.1 | serine/threonine protein kinase 2. Encodes a ribosomal-protein S6 kinase. Gene expression is induced by cold and salt (NaCl). Activation of AtS6k is regulated by 1-naphthylacetic acid and kinetin, at least in part, via a lipid kinase-dependent pathway. Phosphorylates specifically mammalian and plant S6 at 25 degrees C but not at 37 degrees C. Involved in translational up-regulation of ribosomal proteins. | 0 |
| RefSeq | XP_017219201.1 | PREDICTED: serine/threonine-protein kinase AtPK1/AtPK6-like [Daucus carota subsp. sativus] | 0 |
| Q39030 | Serine/threonine-protein kinase AtPK2/AtPK19 OS=Arabidopsis thaliana OX=3702 GN=ATPK2 PE=1 SV=2 | 0 | |
| TrEMBL | A0A161Y965 | Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_026094 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 12.106612 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 10.967404 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 10.588035 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 9.582622 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 10.018732 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 13.25305 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 12.403312 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 12.960366 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 28.210466 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 24.90077 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 26.539574 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 29.697922 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 25.675743 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 23.057766 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 31.045368 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 24.241697 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 24.742872 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 22.519522 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 21.98353 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 30.899549 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 20.548733 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 35.85294 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 55.675816 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 29.213558 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 38.379318 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 21.635275 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 25.826651 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 21.355379 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 21.067165 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 93.514511 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 91.542427 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 79.673195 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 31.472876 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 22.398281 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 35.632694 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 23.466877 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 30.673403 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 31.496695 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 42.258316 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 46.884418 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 74.450569 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 103.68351 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 75.996986 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 70.902893 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 69.601501 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 78.731232 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 63.952202 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 23.792831 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 31.867456 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 28.571072 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg10088, jg18681, jg3153, jg34070 |
| Aizoaceae | Mesembryanthemum crystallinum | 3 | gene_13730, gene_20434, gene_24396 |
| Amaranthaceae | Atriplex hortensis | 3 | Ah023592, Ah031561, Ah032158 |
| Amaranthaceae | Beta vulgaris | 3 | BVRB_2g038690, BVRB_5g115900, BVRB_7g156780 |
| Amaranthaceae | Salicornia bigelovii | 6 | Sbi_jg2129, Sbi_jg30103, Sbi_jg30439, Sbi_jg34374 ... |
| Amaranthaceae | Salicornia europaea | 3 | Seu_jg18348, Seu_jg2638, Seu_jg28675 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00005858, GOSA_00015026 |
| Amaranthaceae | Suaeda glauca | 6 | Sgl51096, Sgl56404, Sgl66110, Sgl70426, Sgl71135, Sgl74718 |
| Amaranthaceae | Chenopodium album | 10 | gene:ENSEOMG00000004609, gene:ENSEOMG00000005292 ... |
| Amaranthaceae | Chenopodium quinoa | 5 | CQ.Regalona.r1.2AG0003160, CQ.Regalona.r1.5AG0021830 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30138450, pistato.v30286220 |
| Apiaceae | Apium graveolens | 2 | Ag10G00994, Ag5G00646 |
| Arecaceae | Cocos nucifera | 2 | COCNU_04G012410, COCNU_16G005650 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103722170 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.674.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri12G23906, Ftri18G16445, Ftri8G23854 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT3G08720.1, AT3G08730.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10020635m.g.v1.0, Thhalv10020669m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp3g07150.v2.2, Sp3g07160.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB01g055810.2N, BniB01g055840.2N, BniB07g058550.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G1854 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G0894 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno11g05810, gene.Cymno14g05330 |
| Dunaliellaceae | Dunaliella salina | 3 | Dusal.0101s00029.v1.0, Dusal.0198s00005.v1.0 ... |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate06g06530, gene.Thate08g16400 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-3730 |
| Nitrariaceae | Nitraria sibirica | 3 | evm.TU.LG01.852, evm.TU.LG02.1656, evm.TU.LG10.835 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00036320 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb2G09538, Lb4G22588, Lb4G25703 |
| Poaceae | Echinochloa crus-galli | 6 | AH01.3740, AH03.4073, BH01.4088, BH03.4411, CH01.4352 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_3AG0247120, gene-QOZ80_3BG0281130 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0111810.1, HORVU.MOREX.r3.4HG0378900.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_017326, gene-QYE76_038716 |
| Poaceae | Oryza coarctata | 4 | Oco05G012830, Oco06G013650, Oco13G015950, Oco14G016760 |
| Poaceae | Oryza sativa | 2 | LOC_Os03g21620.1, LOC_Os07g48290.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_01G363800, gene-BS78_02G391800 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0102630, Pt_Chr0305462, Pt_Chr0602301 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr01G034060, Chr04G010680, Chr07G001260, Chr12G005550 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G227700, Tel4E01G309900 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC2AG012420, gene_TRIDC2BG015190 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS2A02G104500.1, TraesCS2B02G121500.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb015960_P002, Zm00001eb330740_P002 ... |
| Poaceae | Zoysia japonica | 3 | nbis-gene-1682, nbis-gene-3367, nbis-gene-82 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g1263, Zma_g3687, Zma_g7085 |
| Portulacaceae | Portulaca oleracea | 6 | evm.TU.LG01.2560, evm.TU.LG07.200, evm.TU.LG10.75 ... |
| Posidoniaceae | Posidonia oceanica | 6 | gene.Posoc01g21120, gene.Posoc01g27120, gene.Posoc02g17380 ... |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_11_RagTag.958, evm.TU.Scaffold_2_RagTag.529 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-14641, nbisL1-mrna-4662 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-20363, nbisL1-mrna-2081 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-12530 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000009l.638, evm.TU.utg000010l.71 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00005107, Maker00008737 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-2622, nbisL1-mrna-787 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-16610, nbisL1-mrna-8602 |
| Salicaceae | Populus euphratica | 4 | populus_peu11524, populus_peu25250, populus_peu29985 ... |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132601137, gene-LOC132606721, gene-LOC132611211 |
| Solanaceae | Solanum chilense | 3 | SOLCI000686400, SOLCI006774200, SOLCI007195400 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107002300, gene-LOC107012474, gene-LOC107023102 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_15027, gene_6611 |
| Tamaricaceae | Tamarix chinensis | 2 | TC05G0055, TC07G0962 |
| Zosteraceae | Zostera marina | 1 | Zosma06g14310.v3.1 |