Basic Information
Locus ID:
Ag5G00635
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
BEST Arabidopsis thaliana protein match is Ubiquitin carboxyl-terminal hydrolase-related protein (TAIR
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 22780014 | 22787424 | + | Ag5G00635 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.22 | 117,862.04 Da | 48.37 | 83.70 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02257 | Peptidase_C19 | 800 | 1039 | 1.3375E-15 | - |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 709 | 1017 | 5.2E-25 | IPR001394 |
| Pfam | PF04781 | Protein of unknown function (DUF627) | 1 | 94 | 4.9E-12 | IPR006866 |
| Pfam | PF04780 | Protein of unknown function (DUF629) | 192 | 626 | 3.0E-83 | IPR006865 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 709 | 1039 | 1.84E-35 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 703 | 1040 | 6.1E-36 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 709 | 1041 | 23.380257 | IPR028889 |
| Coils | Coil | Coil | 477 | 497 | - | - |
| Coils | Coil | Coil | 174 | 194 | - | - |
| Coils | Coil | Coil | 111 | 131 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G47910.1 | Ubiquitin carboxyl-terminal hydrolase-related protein. | 0 |
| RefSeq | XP_017216618.1 | PREDICTED: uncharacterized protein LOC108194207 isoform X4 [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A164UKR0 | USP domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_026083 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 5.945264 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 5.139746 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 4.129993 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 4.693506 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 5.840904 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 3.096725 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 3.332137 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 2.430979 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 18.721926 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 17.507673 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 19.527765 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 18.073164 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 14.976404 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 12.582704 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 0 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 0 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 0 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 0.029477 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 0.03268 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 0.155869 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 0.164404 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 0.130708 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 0.119928 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 0.140376 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0.407449 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 1.515857 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0.335642 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.078669 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 0.543669 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0.180373 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0.132574 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0.396972 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0.042709 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 0.101993 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 0.041677 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0.176763 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 0.09565 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 6.56979 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 6.22074 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 4.91471 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg18652, jg25786, jg25787 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_13754 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah001005 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g115420 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg30417, Sbi_jg58832 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg28701 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00015055 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl51123, Sgl51124, Sgl56431, Sgl56432 |
| Amaranthaceae | Chenopodium album | 5 | gene:ENSEOMG00000004421, gene:ENSEOMG00000006413 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0021470, CQ.Regalona.r1.5BG0022850 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30137910 |
| Apiaceae | Apium graveolens | 4 | Ag10G00103, Ag5G00278, Ag5G00635, Ag9G00633 |
| Arecaceae | Cocos nucifera | 2 | COCNU_03G002340, COCNU_08G000470 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103721233 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_08.943.V1.1, AsparagusV1_Unassigned.266.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri16G00560 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT3G47890.1, AT3G47910.2 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10010059m.g.v1.0, Thhalv10010060m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp5g14040.v2.2, Sp5g14050.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB05g052230.2N, BniB06g024250.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G1836 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G2014 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno11g04470 |
| Dunaliellaceae | Dunaliella salina | 3 | Dusal.0131s00009.v1.0, Dusal.0131s00011.v1.0 ... |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g37010 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG10.868 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00019078 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb4G26347 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.4872, BH01.4800, CH01.5445 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0234970, gene-QOZ80_3BG0293150 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0402810.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_070520, gene-QYE76_070524 |
| Poaceae | Oryza coarctata | 2 | Oco05G003790, Oco06G003840 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g06950.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G469700 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0101245, Pt_Chr0101253, Pt_Chr0500767 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr01G036440, Chr04G003410, Chr07G007770, Chr12G003010 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G472500 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG003110, gene_TRIDC4BG048540 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G022000.2, TraesCS4B02G281400.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb005070_P001, Zm00001eb403430_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-2811, nbis-gene-4394 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g2004, Zma_g4353 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG01.2591, evm.TU.LG02.846, evm.TU.LG09.2020 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc03g10600, gene.Posoc04g09070 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_11_RagTag.940, evm.TU.Scaffold_4_RagTag.536 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-14623, nbisL1-mrna-28830 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-15552, nbisL1-mrna-20350 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-12513, nbisL1-mrna-1803, nbisL1-mrna-1804 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000008l.344, evm.TU.utg000010l.57 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00000617, Maker00008576 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-14561, nbisL1-mrna-803 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-1515, nbisL1-mrna-8584 |
| Salicaceae | Populus euphratica | 4 | populus_peu00641, populus_peu28544, populus_peu28545 ... |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132600999, gene-LOC132631403, gene-LOC132632685 |
| Solanaceae | Solanum chilense | 2 | SOLCI000687300, SOLCI004957800 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107012282, gene-LOC107023109 |
| Tamaricaceae | Reaumuria soongarica | 3 | MSTRG.12655_chr07_+, gene_12607, gene_15318 |
| Tamaricaceae | Tamarix chinensis | 2 | TC05G0076, TC09G1527 |
| Zosteraceae | Zostera marina | 1 | Zosma06g10440.v3.1 |