halophFGD

Basic Information

Locus ID: Ag5G00631

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Belongs to the protein kinase superfamily. Ser Thr protein kinase family

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr5	22664654	22674006	-	Ag5G00631

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
7.02	99,324.68 Da	43.87	97.59	-0.09

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00069	Protein kinase domain	682	767	5.6E-11	IPR000719
Pfam	PF08263	Leucine rich repeat N-terminal domain	399	433	7.5E-11	IPR013210
Pfam	PF13855	Leucine rich repeat	486	543	3.7E-9	IPR001611
Pfam	PF00067	Cytochrome P450	57	399	1.0E-33	IPR001128
SUPERFAMILY	SSF48264	Cytochrome P450	54	400	4.06E-52	IPR036396
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	672	872	1.88E-33	IPR011009
SUPERFAMILY	SSF52058	L domain-like	398	561	5.83E-37	-
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	755	874	1.1E-22	-
Gene3D	G3DSA:1.10.630.10	Cytochrome P450	45	399	2.2E-67	IPR036396
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	400	580	8.9E-55	IPR032675
Gene3D	G3DSA:3.30.200.20	Phosphorylase Kinase; domain 1	637	754	3.1E-20	-
ProSiteProfiles	PS50011	Protein kinase domain profile.	680	885	12.216737	IPR000719
ProSiteProfiles	PS51450	Leucine-rich repeat profile.	534	556	7.049695	IPR001611
ProSiteProfiles	PS51450	Leucine-rich repeat profile.	510	532	7.011191	IPR001611
ProSitePatterns	PS00107	Protein kinases ATP-binding region signature.	686	708	-	IPR017441

Gene Ontology

Biological Process:

GO:0006468 (protein phosphorylation)

Molecular Function:

GO:0004497 (monooxygenase activity) GO:0004672 (protein kinase activity) GO:0005506 (iron ion binding) GO:0005515 (protein binding) GO:0005524 (ATP binding) GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen) GO:0020037 (heme binding)

Best hit

Source	Best Hit ID	Description
TAIR	AT5G62710.1	Leucine-rich repeat protein kinase family protein.
RefSeq	XP_017216562.1	PREDICTED: LRR receptor-like serine/threonine-protein kinase FEI 1 isoform X1 [Daucus carota subsp. sativus]
Swiss-Prot	C0LGF4	LRR receptor-like serine/threonine-protein kinase FEI 1 OS=Arabidopsis thaliana OX=3702 GN=FEI1 PE=1 SV=1
TrEMBL	A0A498HZH2	Protein kinase domain-containing protein OS=Malus domestica OX=3750 GN=DVH24_001628 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	0.696301	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	0.862188	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	0.433998	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	0.278216	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	0.329847	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	0.312727	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	0.174676	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	0.121542	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	3.098064	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	2.553714	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	3.233312	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	2.569151	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	2.130579	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	2.180664	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	0.836501	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	1.620656	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	1.327411	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	0.567825	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	0.663566	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	0.587072	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	0.518913	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	1.645535	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	2.563078	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	2.970628	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	2.520398	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	1.446999	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	1.117993	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	0.863939	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	1.455433	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	0.067723		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	0		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	0.060623		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	0		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	1.542972		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	0.174906		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	0		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	0		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	0		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	0.815619	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	0.096569	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	0	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	0.14143	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	0	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	0	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	0	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	0.089925	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	0.060391	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	3.181595	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	2.642667	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	3.6971	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	1	jg18643
Aizoaceae	Mesembryanthemum crystallinum	1	gene_19600
Amaranthaceae	Atriplex hortensis	1	Ah000991
Amaranthaceae	Beta vulgaris	1	BVRB_5g115250
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00015052
Amaranthaceae	Suaeda glauca	2	Sgl51118, Sgl56426
Amaranthaceae	Chenopodium album	1	gene:ENSEOMG00000004727
Amaranthaceae	Chenopodium quinoa	2	CQ.Regalona.r1.5AG0021390, CQ.Regalona.r1.5BG0022740
Anacardiaceae	Pistacia vera	1	pistato.v30137820
Apiaceae	Apium graveolens	4	Ag2G01048, Ag4G00334, Ag5G00631, AgUnG01281
Arecaceae	Cocos nucifera	1	COCNU_14G012830
Arecaceae	Phoenix dactylifera	2	gene-LOC103712044, gene-LOC103722252
Asparagaceae	Asparagus officinalis	1	AsparagusV1_03.1508.V1.1
Asteraceae	Flaveria trinervia	3	Ftri18G29501, Ftri1G02047, Ftri9G19821
Brassicaceae	Arabidopsis thaliana	1	AT5G62710.1
Brassicaceae	Eutrema salsugineum	1	Thhalv10003855m.g.v1.0
Brassicaceae	Schrenkiella parvula	1	Sp2g25880.v2.2
Brassicaceae	Brassica nigra	3	BniB06g010990.2N, BniB06g011130.2N, BniB07g041770.2N
Casuarinaceae	Casuarina equisetifolia	1	Ceq04G1826
Casuarinaceae	Casuarina glauca	1	Cgl04G2006
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno15g05030
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate02g14230
Nitrariaceae	Nitraria sibirica	1	evm.TU.LG10.879
Plantaginaceae	Plantago ovata	1	Pov_00028932
Plumbaginaceae	Limonium bicolor	1	Lb5G26730
Poaceae	Echinochloa crus-galli	3	AH05.4223, BH05.4315, CH05.4544
Poaceae	Eleusine coracana subsp. coracana	2	gene-QOZ80_5AG0399640, gene-QOZ80_5BG0448340
Poaceae	Hordeum vulgare	1	HORVU.MOREX.r3.5HG0420330.1
Poaceae	Lolium multiflorum	1	gene-QYE76_000330
Poaceae	Oryza coarctata	2	Oco23G011350, Oco24G011150
Poaceae	Oryza sativa	1	LOC_Os12g44090.1
Poaceae	Paspalum vaginatum	1	gene-BS78_08G169600
Poaceae	Puccinellia tenuiflora	2	Pt_Chr0704812, Pt_Chr0704883
Poaceae	Sporobolus alterniflorus	5	Chr04G020050, Chr06G021000, Chr07G020690, Chr15G013570 ... Chr31G001490
Poaceae	Thinopyrum elongatum	1	Tel5E01G013200
Poaceae	Triticum dicoccoides	2	gene_TRIDC5AG000800, gene_TRIDC5BG000780
Poaceae	Triticum aestivum	3	TraesCS5A02G005300.1, TraesCS5B02G004300.1 ... TraesCS5D02G007200.1
Poaceae	Zea mays	2	Zm00001eb033050_P002, Zm00001eb134100_P001
Poaceae	Zoysia japonica	2	nbis-gene-44411, nbis-gene-47411
Poaceae	Zoysia macrostachya	2	Zma_g25418, Zma_g26208
Portulacaceae	Portulaca oleracea	4	evm.TU.LG01.2598, evm.TU.LG02.841, evm.TU.LG09.2014 ... evm.TU.LG14.1720
Posidoniaceae	Posidonia oceanica	1	gene.Posoc04g13680
Rhizophoraceae	Bruguiera sexangula	1	evm.TU.Scaffold_11_RagTag.935
Rhizophoraceae	Carallia pectinifolia	1	nbisL1-mrna-14611
Rhizophoraceae	Ceriops tagal	1	nbisL1-mrna-20349
Rhizophoraceae	Ceriops zippeliana	1	nbisL1-mrna-12508
Rhizophoraceae	Kandelia candel	1	evm.TU.utg000010l.53
Rhizophoraceae	Kandelia obovata	1	Maker00008484
Rhizophoraceae	Rhizophora apiculata	1	nbisL1-mrna-807
Rhizophoraceae	Rhizophora mangle	1	nbisL1-mrna-8579
Salicaceae	Populus euphratica	2	populus_peu29954, populus_peu29965
Solanaceae	Lycium barbarum	1	gene-LOC132632696
Solanaceae	Solanum chilense	1	SOLCI006943600
Solanaceae	Solanum pennellii	1	gene-LOC107014984
Tamaricaceae	Reaumuria soongarica	2	gene_12602, gene_15961
Tamaricaceae	Tamarix chinensis	2	TC05G0102, TC09G1539
Zosteraceae	Zostera marina	1	Zosma03g33550.v3.1