Basic Information
Locus ID:
Ag5G00552
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Transcription initiation factor IIF subunit
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 18616420 | 18623137 | - | Ag5G00552 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.87 | 60,123.66 Da | 47.44 | 57.75 | -1.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF05793 | Transcription initiation factor IIF, alpha subunit (TFIIF-alpha) | 48 | 541 | 4.1E-144 | IPR008851 |
| SUPERFAMILY | SSF50916 | Rap30/74 interaction domains | 53 | 182 | 2.88E-31 | IPR011039 |
| SUPERFAMILY | SSF46785 | Winged helix DNA-binding domain | 474 | 541 | 4.62E-18 | IPR036390 |
| Gene3D | G3DSA:1.10.10.10 | - | 460 | 541 | 4.8E-20 | IPR036388 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 398 | 418 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 244 | 268 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 269 | 305 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 439 | 457 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 206 | 479 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 206 | 233 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 459 | 474 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 377 | 394 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 357 | 376 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G12610.1 | transcription activators;DNA binding;RNA polymerase II transcription factors;catalytics;transcription initiation factors. | 0 |
| RefSeq | XP_017219348.1 | PREDICTED: transcription initiation factor IIF subunit alpha [Daucus carota subsp. sativus] | 0 |
| Q9SU25 | Transcription initiation factor IIF subunit alpha OS=Arabidopsis thaliana OX=3702 GN=RAP74 PE=1 SV=1 | 0 | |
| TrEMBL | A0A7J7GXN9 | Transcription initiation factor IIF subunit alpha OS=Camellia sinensis OX=4442 GN=HYC85_018321 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 165.573898 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 97.781212 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 91.404831 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 88.211372 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 88.771317 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 81.204247 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 91.841812 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 96.06897 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 84.520653 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 88.843254 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 91.397919 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 110.2771 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 97.842056 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 89.639786 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 43.695038 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 44.774578 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 45.226772 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 58.643147 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 48.316887 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 59.575874 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 59.723907 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 64.038918 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 67.984108 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 66.513313 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 60.063694 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 60.65353 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 52.628769 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 55.552773 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 65.464806 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 37.101959 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 40.519875 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 27.015818 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 34.839348 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 41.444038 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 41.836548 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 33.539295 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 21.137383 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 28.268782 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 33.732018 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 27.369562 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 24.477774 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 81.646095 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 71.681732 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 127.6129 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 113.133163 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 87.226868 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 105.146408 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 100.204987 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 109.001404 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 107.20546 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg21825 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_21976 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah017388 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg25869, Sbi_jg9715 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg18951 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00023853 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl41694, Sgl46494 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000008932, gene:ENSEOMG00000031564 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0000970, CQ.Regalona.r1.8BG0000850 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30067680 |
| Apiaceae | Apium graveolens | 1 | Ag5G00552 |
| Arecaceae | Cocos nucifera | 1 | scaffold033573G000020 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103722388 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.3077.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri18G26828 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G12610.2 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10028564m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g04900.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB08g037550.2N, BniB08g048570.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq01G2085 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl01G2285 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno01g12920, gene.Cymno06g02400 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g16700 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-7732 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG10.725 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00006027, Pov_00011997 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb4G23008 |
| Poaceae | Echinochloa crus-galli | 6 | AH01.4323, BH01.4649, CH01.2976, CH01.4943, Contig775.3 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_2AG0120590, gene-QOZ80_2BG0175170 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.1HG0036480.1, HORVU.MOREX.r3.4HG0391440.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_010883, gene-QYE76_069279 |
| Poaceae | Oryza coarctata | 4 | Oco05G008340, Oco06G008620, Oco19G001560, Oco20G001770 |
| Poaceae | Oryza sativa | 2 | LOC_Os03g14720.1, LOC_Os10g10990.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_01G416300, gene-BS78_K109600 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0102065, Pt_Chr0102086, Pt_Chr0501270 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr01G029660, Chr06G021660, Chr12G009870, Chr15G017240 |
| Poaceae | Thinopyrum elongatum | 2 | Tel1E01G259000, Tel4E01G386700 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC1AG020750, gene_TRIDC1BG024930 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS1A02G138600.1, TraesCS1B02G153600.2 ... |
| Poaceae | Zea mays | 2 | Zm00001eb224360_P001, Zm00001eb398520_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-27601 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g15890, Zma_g4015 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG03.2422, evm.TU.LG17.1467 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g24020 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_7_RagTag.1498 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-19986, nbisL1-mrna-20310 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-17692 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-13436 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000002l.183 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00012111 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-14928 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-12181 |
| Salicaceae | Populus euphratica | 1 | populus_peu26459 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132613971 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107002833 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_2685, gene_446 |
| Tamaricaceae | Tamarix chinensis | 1 | TC08G0175 |
| Zosteraceae | Zostera marina | 2 | Zosma02g02720.v3.1, Zosma03g18310.v3.1 |