halophFGD

Basic Information

Locus ID: Ag5G00551

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: WD repeat-containing protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr5	18604906	18610558	-	Ag5G00551

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.00	36,977.22 Da	36.27	78.71	-0.26

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00400	WD domain, G-beta repeat	37	63	0.0032	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	114	150	3.4E-4	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	257	279	0.015	IPR001680
SUPERFAMILY	SSF50978	WD40 repeat-like	24	314	8.61E-49	IPR036322
Gene3D	G3DSA:2.130.10.10	-	17	320	1.1E-46	IPR015943
SMART	SM00320	WD40_4	24	63	7.1E-5	IPR001680
SMART	SM00320	WD40_4	196	235	12.0	IPR001680
SMART	SM00320	WD40_4	238	280	0.023	IPR001680
SMART	SM00320	WD40_4	111	150	3.8E-6	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	31	72	12.446706	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	31	66	9.388329	-
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	259	289	11.744925	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	118	150	12.212779	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	118	150	10.179234	-
PRINTS	PR00320	G protein beta WD-40 repeat signature	137	151	1.1E-5	IPR020472
PRINTS	PR00320	G protein beta WD-40 repeat signature	50	64	1.1E-5	IPR020472
PRINTS	PR00320	G protein beta WD-40 repeat signature	267	281	1.1E-5	IPR020472

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K14962 (COMPASS component SWD2)

Pathway:

ko03015 (mRNA surveillance pathway) map03015 (mRNA surveillance pathway)

Best hit

Source	Best Hit ID	Description
TAIR	AT5G66240.2	Transducin/WD40 repeat-like superfamily protein.
RefSeq	XP_017216486.1	PREDICTED: WD repeat-containing protein 82-B [Daucus carota subsp. sativus]
Swiss-Prot	Q9LYK6	Protein ANTHESIS POMOTING FACTOR 1 OS=Arabidopsis thaliana OX=3702 GN=APRF1 PE=2 SV=1
TrEMBL	A0A161ZQZ8	WD_REPEATS_REGION domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_025995 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	12.187936	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	7.132014	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	8.546993	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	7.415392	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	7.376301	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	15.884295	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	10.439898	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	12.912133	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	13.680893	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	10.154574	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	13.65395	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	22.229721	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	15.869648	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	13.181965	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	0.941098	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	2.035164	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	3.322191	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	2.583891	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	4.553965	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	3.204784	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	3.013332	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	6.980645	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	4.990252	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	4.498282	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	5.543523	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	4.6284	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	3.930984	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	3.662198	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	4.490272	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	3.164822		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	4.74337		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	4.399024		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	8.021246		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	8.616445		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	5.102962		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	4.995868		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	3.514741		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	3.709989		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	6.823349	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	3.675209	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	2.676008	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	5.285724	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	4.579758	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	10.132488	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	10.304057	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	5.700599	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	7.748664	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	12.279539	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	13.374345	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	14.132475	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	1	jg17204
Aizoaceae	Mesembryanthemum crystallinum	2	gene_11361, gene_24102
Amaranthaceae	Atriplex hortensis	2	Ah007045, Ah026871
Amaranthaceae	Beta vulgaris	1	BVRB_6g130730
Amaranthaceae	Salicornia bigelovii	3	Sbi_jg13682, Sbi_jg52220, Sbi_jg533
Amaranthaceae	Salicornia europaea	2	Seu_jg4111, Seu_jg9624
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00017649, GOSA_00027662
Amaranthaceae	Suaeda glauca	4	Sgl21084, Sgl26439, Sgl33232, Sgl38620
Amaranthaceae	Chenopodium album	6	gene:ENSEOMG00000000572, gene:ENSEOMG00000003847 ... gene:ENSEOMG00000011881, gene:ENSEOMG00000028347, gene:ENSEOMG00000028714, gene:ENSEOMG00000042424
Amaranthaceae	Chenopodium quinoa	3	CQ.Regalona.r1.4BG0014020, CQ.Regalona.r1.6AG0020210 ... CQ.Regalona.r1.6BG0021290
Anacardiaceae	Pistacia vera	2	pistato.v30022920, pistato.v30095400
Apiaceae	Apium graveolens	2	Ag3G00865, Ag5G00551
Arecaceae	Cocos nucifera	2	COCNU_06G008650, COCNU_07G001530
Arecaceae	Phoenix dactylifera	2	gene-LOC103708156, gene-LOC103719890
Asparagaceae	Asparagus officinalis	2	AsparagusV1_05.2967.V1.1, AsparagusV1_10.303.V1.1
Asteraceae	Flaveria trinervia	2	Ftri17G19139, Ftri18G12982
Brassicaceae	Arabidopsis thaliana	2	AT5G14530.1, AT5G66240.2
Brassicaceae	Eutrema salsugineum	2	Thhalv10004561m.g.v1.0, Thhalv10014091m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp2g30450.v2.2, Sp6g29480.v2.2
Brassicaceae	Brassica nigra	2	BniB04g000100.2N, BniB05g024030.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq02G1869, Ceq06G0191
Casuarinaceae	Casuarina glauca	2	Cgl02G1949, Cgl06G0208
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno03g04940, gene.Cymno11g00260
Dunaliellaceae	Dunaliella salina	2	Dusal.0509s00001.v1.0, Dusal.0724s00009.v1.0
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate03g02200, gene.Thate08g07400
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-6988
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG05.312, evm.TU.LG07.479, evm.TU.LG09.90
Plantaginaceae	Plantago ovata	3	Pov_00017869, Pov_00020427, Pov_00027853
Plumbaginaceae	Limonium bicolor	4	Lb1G03735, Lb1G03753, Lb4G22456, Lb4G22458
Poaceae	Echinochloa crus-galli	6	AH04.1133, AH05.1561, BH04.1107, BH05.1711, CH04.1285 ... CH04.2170
Poaceae	Eleusine coracana subsp. coracana	4	gene-QOZ80_5AG0364650, gene-QOZ80_5BG0412600 ... gene-QOZ80_9AG0679120, gene-QOZ80_9BG0702910
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.1HG0079810.1, HORVU.MOREX.r3.4HG0341890.1
Poaceae	Lolium multiflorum	2	gene-QYE76_016240, gene-QYE76_063918
Poaceae	Oryza coarctata	4	Oco04G024600, Oco10G015580, Oco13G011530, Oco14G012290
Poaceae	Oryza sativa	2	LOC_Os05g46570.1, LOC_Os07g40030.1
Poaceae	Paspalum vaginatum	2	gene-BS78_02G362100, gene-BS78_09G220400
Poaceae	Puccinellia tenuiflora	2	Pt_Chr0503837, Pt_Chr0503854
Poaceae	Sporobolus alterniflorus	2	Chr01G014940, Chr16G011850
Poaceae	Thinopyrum elongatum	2	Tel1E01G593600, Tel4E01G121300
Poaceae	Triticum dicoccoides	4	gene_TRIDC1AG053710, gene_TRIDC1BG061510 ... gene_TRIDC4AG037870, gene_TRIDC4BG011670
Poaceae	Triticum aestivum	6	TraesCS1A02G365700.1, TraesCS1B02G383300.1 ... TraesCS1D02G371100.1, TraesCS4A02G239700.1, TraesCS4B02G075300.1, TraesCS4D02G074000.1
Poaceae	Zea mays	4	Zm00001eb072520_P001, Zm00001eb294550_P001 ... Zm00001eb298490_P001, Zm00001eb342540_P002
Poaceae	Zoysia japonica	1	nbis-gene-43356
Poaceae	Zoysia macrostachya	2	Zma_g18710, Zma_g28712
Portulacaceae	Portulaca oleracea	4	evm.TU.LG05.354, evm.TU.LG08.1480, evm.TU.LG22.372 ... evm.TU.LG25.958
Posidoniaceae	Posidonia oceanica	2	gene.Posoc02g12300, gene.Posoc04g00720
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_3_RagTag.110, evm.TU.Scaffold_6_RagTag.129
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-14943, nbisL1-mrna-264
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-14314, nbisL1-mrna-20739
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-112, nbisL1-mrna-5904
Rhizophoraceae	Kandelia candel	2	evm.TU.utg000011l.91, evm.TU.utg000019l.1146
Rhizophoraceae	Kandelia obovata	2	Maker00006788, Maker00007986
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-11883, nbisL1-mrna-6554
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-17468, nbisL1-mrna-2416
Salicaceae	Populus euphratica	4	populus_peu01073, populus_peu11897, populus_peu14138 ... populus_peu37102
Solanaceae	Lycium barbarum	2	gene-LOC132616879, gene-LOC132621919
Solanaceae	Solanum chilense	2	SOLCI001565300, SOLCI006301500
Solanaceae	Solanum pennellii	2	gene-LOC107005219, gene-LOC107009002
Tamaricaceae	Reaumuria soongarica	2	STRG.23263_chr05_+, gene_5676
Tamaricaceae	Tamarix chinensis	2	TC01G3582, TC02G2497
Zosteraceae	Zostera marina	2	Zosma01g00820.v3.1, Zosma03g00660.v3.1