Basic Information
Locus ID:
Ag5G00437
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin- conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 13527661 | 13535479 | - | Ag5G00437 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.97 | 42,090.36 Da | 53.73 | 74.41 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16571 | RING-HC_SIAHs | 159 | 196 | 2.08637E-9 | - |
| Pfam | PF03145 | Seven in absentia protein family | 204 | 353 | 8.9E-14 | IPR018121 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 215 | 388 | 1.24E-24 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 209 | 267 | 4.9E-13 | IPR013083 |
| ProSiteProfiles | PS51081 | Zinc finger SIAH-type profile. | 214 | 272 | 13.724751 | IPR013010 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 161 | 196 | 8.697757 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 59 | 103 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 63 | 86 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 17 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 87 | 103 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 43 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G37890.1 | Protein with RING/U-box and TRAF-like domains. | 0 |
| RefSeq | XP_017218977.1 | PREDICTED: E3 ubiquitin-protein ligase SINA-like 7 isoform X2 [Daucus carota subsp. sativus] | 0 |
| Q9FKD7 | E3 ubiquitin-protein ligase SINA-like 7 OS=Arabidopsis thaliana OX=3702 GN=At5g37890 PE=2 SV=1 | 0 | |
| TrEMBL | A0A164UF38 | RING-type E3 ubiquitin transferase OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_025881 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 21.747314 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 16.380562 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 18.679281 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 14.74469 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 17.341984 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 17.654179 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 15.505775 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 16.333899 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 31.396425 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 30.036057 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 32.056267 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 32.087303 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 27.692993 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 28.631481 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 15.878685 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 16.764315 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 16.262133 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 14.626051 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 13.334848 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 14.057091 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 14.108248 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 21.665524 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 24.432966 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 20.609993 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 21.328442 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 15.832385 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 14.942529 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 15.558042 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 17.970528 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 25.435246 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 25.336266 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 21.73588 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 29.603848 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 23.863377 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 24.793661 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 17.904842 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 19.054949 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 21.017157 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 22.293365 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 12.130805 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 8.127025 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 13.830267 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 16.557009 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 23.461859 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 19.427721 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 17.231609 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 17.311485 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 30.242424 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 28.924953 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 28.689007 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg30805, jg30806, jg39843 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_23891 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah035556 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_2g027530, BVRB_2g027540 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg21937, Sbi_jg29589 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg15805 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00008444 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl62204, Sgl66766 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000020508, gene:ENSEOMG00000020557 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.2AG0018660, CQ.Regalona.r1.2BG0020330 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30190790, pistato.v30190810 |
| Apiaceae | Apium graveolens | 1 | Ag5G00437 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103722981, gene-LOC103722993, gene-LOC120111461 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_01.2924.V1.1, AsparagusV1_08.2602.V1.1 ... |
| Asteraceae | Flaveria trinervia | 5 | Ftri17G20592, Ftri18G09587, Ftri18G29975, Ftri1G07938 ... |
| Brassicaceae | Arabidopsis thaliana | 11 | AT1G66610.1, AT1G66620.1, AT1G66630.1, AT1G66650.1 ... |
| Brassicaceae | Eutrema salsugineum | 14 | Thhalv10006392m.g.v1.0, Thhalv10018712m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 9 | Sp5g21600.v2.2, Sp5g21605.v2.2, Sp5g24750.v2.2 ... |
| Brassicaceae | Brassica nigra | 27 | BniB01g018220.2N, BniB01g018240.2N, BniB01g023990.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G0675 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G0653 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno09g08510 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate02g06430, gene.Thate06g12290 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-3722 |
| Nitrariaceae | Nitraria sibirica | 17 | evm.TU.LG02.527, evm.TU.LG02.536, evm.TU.LG02.537 ... |
| Plantaginaceae | Plantago ovata | 14 | Pov_00001204, Pov_00005327, Pov_00013832, Pov_00013834 ... |
| Plumbaginaceae | Limonium bicolor | 4 | Lb2G12968, Lb2G15499, Lb3G19694, Lb6G29729 |
| Poaceae | Echinochloa crus-galli | 51 | AH01.1327, AH02.1233, AH02.1239, AH02.1241, AH02.1244 ... |
| Poaceae | Eleusine coracana subsp. coracana | 30 | gene-QOZ80_1AG0007790, gene-QOZ80_1AG0007900 ... |
| Poaceae | Hordeum vulgare | 13 | HORVU.MOREX.r3.1HG0013070.1, HORVU.MOREX.r3.3HG0223150.1 ... |
| Poaceae | Lolium multiflorum | 34 | gene-QYE76_009611, gene-QYE76_009613, gene-QYE76_009622 ... |
| Poaceae | Oryza coarctata | 7 | Oco01G000900, Oco01G000930, Oco01G020900, Oco06G015220 ... |
| Poaceae | Oryza sativa | 13 | LOC_Os01g03270.1, LOC_Os01g03290.1, LOC_Os01g03400.1 ... |
| Poaceae | Paspalum vaginatum | 20 | gene-BS78_01G213800, gene-BS78_03G081700, gene-BS78_K088300 ... |
| Poaceae | Puccinellia tenuiflora | 16 | Pt_Chr0100977, Pt_Chr0101898, Pt_Chr0201378, Pt_Chr0205484 ... |
| Poaceae | Sporobolus alterniflorus | 13 | Chr02G024560, Chr02G024570, Chr02G024990, Chr02G025000 ... |
| Poaceae | Thinopyrum elongatum | 13 | Tel1E01G125400, Tel3E01G051700, Tel3E01G054600 ... |
| Poaceae | Triticum dicoccoides | 28 | gene_TRIDC1BG010370, gene_TRIDC3AG000440 ... |
| Poaceae | Triticum aestivum | 54 | TraesCS1A02G060800.1, TraesCS1D02G061700.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb125780_P001, Zm00001eb132940_P001 |
| Poaceae | Zoysia japonica | 8 | nbis-gene-12472, nbis-gene-20499, nbis-gene-20501 ... |
| Poaceae | Zoysia macrostachya | 2 | Zma_g25734, Zma_g3175 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG06.837, evm.TU.LG11.18 |
| Posidoniaceae | Posidonia oceanica | 4 | gene.Posoc04g03610, gene.Posoc04g21270, gene.Posoc07g01530 ... |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_3_RagTag.729, evm.TU.Scaffold_6_RagTag.1280 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-1231, nbisL1-mrna-16249 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-12003, nbisL1-mrna-12004 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-1103, nbisL1-mrna-6412 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000011l.825, evm.TU.utg000019l.771 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00008402, Maker00012939 |
| Rhizophoraceae | Rhizophora apiculata | 3 | nbisL1-mrna-13476, nbisL1-mrna-20994, nbisL1-mrna-5239 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-3974 |
| Salicaceae | Populus euphratica | 6 | populus_peu09613, populus_peu09614, populus_peu09811 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132616740, gene-LOC132617121 |
| Solanaceae | Solanum chilense | 2 | SOLCI002214900, SOLCI005012100 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107014420, gene-LOC107015388 |
| Tamaricaceae | Reaumuria soongarica | 5 | MSTRG.378_chr01_+, MSTRG.379_chr01_+, STRG.16702_chr08_- ... |
| Tamaricaceae | Tamarix chinensis | 2 | TC01G0208, TC05G1391 |
| Zosteraceae | Zostera marina | 1 | Zosma01g06640.v3.1 |