Basic Information
Locus ID:
Ag5G00397
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Cytochrome c oxidase subunit 6a
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 12466031 | 12468768 | + | Ag5G00397 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.17 | 10,820.11 Da | 58.17 | 64.24 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02046 | Cytochrome c oxidase subunit VIa | 36 | 89 | 7.7E-6 | IPR001349 |
| SUPERFAMILY | SSF81411 | Mitochondrial cytochrome c oxidase subunit VIa | 31 | 98 | 4.97E-16 | IPR036418 |
| Gene3D | G3DSA:4.10.95.10 | Cytochrome c oxidase, subunit VIa | 30 | 99 | 2.0E-13 | IPR036418 |
| PIRSF | PIRSF000277 | COX_VIa | 1 | 99 | 2.8E-21 | IPR001349 |
Gene Ontology
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G37830.1 | cytochrome c oxidase-related. | 0 |
| RefSeq | XP_017216348.1 | PREDICTED: cytochrome c oxidase subunit 6a, mitochondrial [Daucus carota subsp. sativus] | 0 |
| Q9T070 | Cytochrome c oxidase subunit 6a, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=COX6A PE=3 SV=1 | 0 | |
| TrEMBL | A0A161X8B0 | Cytochrome c oxidase subunit 6a, mitochondrial OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_025838 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 113.452858 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 105.452728 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 103.096519 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 106.892776 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 104.288269 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 83.261497 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 96.723152 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 74.753754 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 315.229645 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 301.078735 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 302.370911 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 352.582886 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 343.117676 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 285.67749 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 466.431549 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 463.910034 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 489.891235 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 498.035126 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 401.541321 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 502.212738 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 537.038757 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 565.34906 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 602.263672 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 582.452454 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 488.306763 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 441.250793 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 458.24585 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 352.916779 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 429.295502 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 164.833176 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 134.728638 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 147.884949 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 118.556908 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 231.564545 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 126.178162 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 247.288406 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 201.213074 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 240.449768 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 139.979965 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 141.473724 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 131.993378 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 540.127563 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 509.592255 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 293.180664 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 375.749664 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 641.870911 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 479.299438 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 547.660645 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 454.829285 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 435.072845 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg39893 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah026525 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g137250 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg13310, Sbi_jg52539 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg9301 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00013333 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl34471, Sgl39884 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000003052, gene:ENSEOMG00000003854 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.6BG0018670 |
| Anacardiaceae | Pistacia vera | 8 | pistato.v30072660, pistato.v30105500, pistato.v30131380 ... |
| Apiaceae | Apium graveolens | 2 | Ag5G00397, Ag9G01291 |
| Arecaceae | Cocos nucifera | 2 | COCNU_06G019430, COCNU_14G009910 |
| Arecaceae | Phoenix dactylifera | 4 | gene-LOC103696908, gene-LOC103704262, gene-LOC103707633 ... |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_03.2403.V1.1, AsparagusV1_03.2442.V1.1 ... |
| Asteraceae | Flaveria trinervia | 3 | Ftri17G15502, Ftri18G22597, Ftri6G20571 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G37830.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10026651m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g35470.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB03g014480.2N, BniB05g001240.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G0422 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G0441 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno10g09100, gene.Cymno14g06640 |
| Hydrocharitaceae | Thalassia testudinum | 3 | gene.Thate02g09480, gene.Thate05g28510, gene.Thate06g07120 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-10590 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.2624 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00024123 |
| Plumbaginaceae | Limonium bicolor | 4 | Lb1G05832, Lb2G11890, Lb8G35745, Lb8G36415 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.52, BH01.588, CH01.566 |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_3AG0214240, gene-QOZ80_3BG0259530 ... |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_061587 |
| Poaceae | Oryza coarctata | 2 | Oco05G024760, Oco14G005080 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g56190.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G065800 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0107409, Pt_Chr0206575 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr01G003980, Chr04G019830, Chr04G029620, Chr06G020760 ... |
| Poaceae | Thinopyrum elongatum | 3 | Tel5E01G641800, Tel6E01G298600, Tel7E01G886400 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC1BG059210, gene_TRIDC5AG059060 ... |
| Poaceae | Triticum aestivum | 5 | TraesCS4B02G150100.1, TraesCS5A02G406700.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb058950_P001 |
| Poaceae | Zoysia japonica | 4 | nbis-gene-15210, nbis-gene-16323, nbis-gene-42115 ... |
| Poaceae | Zoysia macrostachya | 4 | Zma_g25401, Zma_g2677, Zma_g28063, Zma_g382 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG07.954, evm.TU.LG15.867 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g18660 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_6_RagTag.1748 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-17414, nbisL1-mrna-807 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-1003, nbisL1-mrna-16370 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-12022 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000011l.1062, evm.TU.utg000019l.540 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00008381 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-15419, nbisL1-mrna-6174 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-1858, nbisL1-mrna-3340 |
| Salicaceae | Populus euphratica | 1 | populus_peu23734 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132617233, gene-LOC132621760 |
| Solanaceae | Solanum chilense | 2 | SOLCI000339800, SOLCI000998600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107008665 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_15580 |
| Tamaricaceae | Tamarix chinensis | 1 | TC09G0309 |
| Zosteraceae | Zostera marina | 1 | Zosma03g02830.v3.1 |