Basic Information
Locus ID:
Ag5G00396
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 12453592 | 12457583 | + | Ag5G00396 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.87 | 109,823.56 Da | 36.87 | 101.27 | -0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00560 | Leucine Rich Repeat | 280 | 302 | 0.16 | IPR001611 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 687 | 957 | 6.4E-46 | IPR001245 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 20 | 58 | 4.3E-12 | IPR013210 |
| Pfam | PF00560 | Leucine Rich Repeat | 159 | 176 | 0.94 | IPR001611 |
| SUPERFAMILY | SSF52047 | RNI-like | 65 | 388 | 3.3E-62 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 680 | 957 | 3.64E-74 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 295 | 612 | 2.21E-54 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 300 | 618 | 2.2E-87 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 20 | 299 | 2.9E-77 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 764 | 975 | 2.7E-59 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 653 | 763 | 5.5E-25 | - |
| SMART | SM00369 | LRR_typ_2 | 494 | 518 | 200.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 566 | 589 | 14.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 278 | 301 | 58.0 | IPR003591 |
| SMART | SM00220 | serkin_6 | 686 | 956 | 1.6E-29 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 133 | 156 | 330.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 108 | 132 | 60.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 326 | 350 | 42.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 351 | 374 | 100.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 157 | 181 | 64.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 686 | 960 | 37.248051 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 808 | 820 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 959 | 1007 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G65700.1 | Leucine-rich receptor-like protein kinase family protein. Encodes a CLAVATA1-related receptor kinase-like protein required for both shoot and flower meristem function. Very similar to BAM2,with more than 85% a.a. identity. It has a broad expression pattern and is involved in vascular strand development in the leaf, control of leaf shape, size and symmetry, male gametophyte development and ovule specification and function. Anthers of double mutants (bam1bam2) appeared abnormal at a very early stage and lack the endothecium, middle, and tapetum layers. Further analyses revealed that cells interior to the epidermis (in anther tissue) acquire some characteristics of pollen mother cells (PMCs), suggesting defects in cell fate specification. The pollen mother-like cells degenerate before the completion of meiosis, suggesting that these cells are defective. In addition, the BAM1 expression pattern supports both an early role in promoting somatic cell fates and a subsequent function in the PMCs. | 0 |
| RefSeq | XP_017218556.1 | PREDICTED: leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 [Daucus carota subsp. sativus] | 0 |
| O49545 | Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 OS=Arabidopsis thaliana OX=3702 GN=BAM1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A164UDW3 | Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_025839 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 56.811913 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 47.345848 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 31.476038 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 41.198627 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 42.876984 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 6.784009 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 5.630614 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 1.646635 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 253.722794 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 249.16066 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 267.626221 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 247.553177 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 211.185699 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 185.253326 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 29.795958 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 36.547619 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 38.471378 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 41.720264 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 41.180927 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 30.464722 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 26.704708 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 89.266785 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 111.306442 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 109.012581 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 83.227783 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 63.71283 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 85.407127 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 25.472809 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 77.759315 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 23.38168 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 31.822054 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 29.801569 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 17.919809 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 73.982025 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 17.00931 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 12.45977 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 10.198054 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 7.52556 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 95.079254 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 33.721321 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 3.967356 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 2.072141 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 1.796001 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 0.881675 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 2.544559 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 3.556161 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 11.281561 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 114.78508 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 114.374397 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 145.273331 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology