Basic Information
Locus ID:
Ag5G00382
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Glycine-rich domain-containing protein-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 11846984 | 11848100 | + | Ag5G00382 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.74 | 17,333.78 Da | 24.10 | 89.46 | -0.41 |
Protein Domain:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G22660.1 | Protein of unknown function (duplicated DUF1399). | 0 |
| RefSeq | XP_017218224.1 | PREDICTED: glycine-rich domain-containing protein 1-like isoform X4 [Daucus carota subsp. sativus] | 0 |
| Q9ZQ47 | Glycine-rich domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=GRDP1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A822ZBM8 | Glycine-rich domain-containing protein 1-like OS=Nelumbo nucifera OX=4432 GN=HUJ06_015178 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 13.541826 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 6.285202 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 5.521904 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 7.279164 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 8.052402 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 5.867486 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 6.766049 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 7.187172 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 6.4839 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 7.197671 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 6.121311 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 6.426259 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 10.406186 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 6.598233 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 8.128129 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 8.125884 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 12.28184 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 6.927215 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 8.643906 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 3.467656 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 2.992182 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 13.368135 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 13.234854 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 12.58471 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 11.029491 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 9.168454 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 8.183087 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 7.158069 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 7.958571 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 7.172878 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 9.137602 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 4.119315 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 6.377439 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 11.877477 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 7.886393 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 2.545036 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 2.416178 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 2.201779 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 3.126012 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 2.682611 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 1.96428 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 1.863689 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 1.174559 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 4.016138 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 3.528154 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 2.344506 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 3.681593 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 21.739004 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 27.834219 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 23.135412 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg30759 |
| Aizoaceae | Mesembryanthemum crystallinum | 16 | gene_11039, gene_11041, gene_11042, gene_11044, gene_11110 ... |
| Amaranthaceae | Atriplex hortensis | 1 | Ah012951 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g152880 |
| Amaranthaceae | Salicornia bigelovii | 7 | Sbi_jg43027, Sbi_jg43028, Sbi_jg43035, Sbi_jg45629 ... |
| Amaranthaceae | Salicornia europaea | 3 | Seu_jg11474, Seu_jg11480, Seu_jg11481 |
| Amaranthaceae | Suaeda aralocaspica | 6 | GOSA_00006932, GOSA_00016889, GOSA_00016899, GOSA_00016900 ... |
| Amaranthaceae | Suaeda glauca | 20 | Sgl12745, Sgl17988, Sgl34025, Sgl34066, Sgl34275, Sgl35599 ... |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000000311, gene:ENSEOMG00000013168 ... |
| Amaranthaceae | Chenopodium quinoa | 5 | CQ.Regalona.r1.1AG0009620, CQ.Regalona.r1.1AG0010220 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30204200 |
| Apiaceae | Apium graveolens | 2 | Ag5G00379, Ag5G00382 |
| Arecaceae | Cocos nucifera | 1 | COCNU_05G008660 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103701943 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_07.2174.V1.1, AsparagusV1_07.3643.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri17G21684, Ftri18G15253, Ftri18G31316 |
| Brassicaceae | Arabidopsis thaliana | 4 | AT1G78030.1, AT2G22660.2, AT4G37682.1, AT4G37900.1 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10000046m.g.v1.0, Thhalv10012182m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 3 | Sp1g35220.v2.2, Sp4g01683.v2.2, Sp7g35540.v2.2 |
| Brassicaceae | Brassica nigra | 11 | BniB01g021340.2N, BniB02g019470.2N, BniB02g019480.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G0392 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G0401 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno14g00430 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate06g12930 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-10599 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.2652 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00023244 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb1G06002, Lb7G34712, Lb7G34715 |
| Poaceae | Echinochloa crus-galli | 3 | AH04.2014, BH04.2039, CH04.2381 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_9AG0689950, gene-QOZ80_9BG0714790 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.3HG0221340.1, HORVU.MOREX.r3.7HG0735950.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_065896 |
| Poaceae | Oryza coarctata | 1 | Oco22G009860 |
| Poaceae | Oryza sativa | 1 | LOC_Os11g40590.3 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_05G212400 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0103305 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr16G004630 |
| Poaceae | Thinopyrum elongatum | 2 | Tel3E01G039300, Tel7E01G787300 |
| Poaceae | Triticum dicoccoides | 5 | gene_TRIDC1BG066540, gene_TRIDC3AG000890 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS3A02G022700.1, TraesCS3B02G022500.2 ... |
| Poaceae | Zea mays | 1 | Zm00001eb166550_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-43163 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g18211 |
| Portulacaceae | Portulaca oleracea | 8 | evm.TU.LG02.1898, evm.TU.LG02.1903, evm.TU.LG04.435 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g04480 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_3_RagTag.1150, evm.TU.Scaffold_6_RagTag.1729 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-17427, nbisL1-mrna-823 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-1308, nbisL1-mrna-449 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-12037, nbisL1-mrna-2404 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000011l.1052, evm.TU.utg000019l.551 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00001881, Maker00007043 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-15408, nbisL1-mrna-6164 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-1844, nbisL1-mrna-3355 |
| Salicaceae | Populus euphratica | 4 | populus_peu05323, populus_peu28297, populus_peu28298 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132621069, gene-LOC132622789 |
| Solanaceae | Solanum chilense | 2 | SOLCI000782000, SOLCI004558700 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107010938, gene-LOC107011120 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_15592, gene_15593 |
| Tamaricaceae | Tamarix chinensis | 1 | TC09G0273 |
| Zosteraceae | Zostera marina | 1 | Zosma06g06750.v3.1 |