Basic Information
Locus ID:
Ag5G00375
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Short Name:
SYMRK
Description:
Nodulation receptor kinase-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 11636453 | 11644119 | + | Ag5G00375 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.35 | 104,353.04 Da | 36.16 | 87.59 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 604 | 871 | 1.02736E-96 | - |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 603 | 870 | 4.3E-45 | IPR001245 |
| Pfam | PF12819 | Malectin-like domain | 39 | 352 | 1.3E-48 | IPR024788 |
| SUPERFAMILY | SSF52058 | L domain-like | 382 | 501 | 7.06E-20 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 576 | 870 | 4.32E-74 | IPR011009 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 360 | 511 | 2.1E-23 | IPR032675 |
| Gene3D | G3DSA:2.60.120.430 | - | 190 | 354 | 3.1E-9 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 674 | 889 | 3.7E-59 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 569 | 673 | 1.3E-30 | - |
| SMART | SM00220 | serkin_6 | 600 | 875 | 7.2E-25 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 598 | 875 | 36.456547 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 720 | 732 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 604 | 626 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 905 | 919 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 905 | 928 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G48740.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_017218470.1 | PREDICTED: nodulation receptor kinase-like [Daucus carota subsp. sativus] | 0 |
| Q8L4H4 | Nodulation receptor kinase OS=Medicago truncatula OX=3880 GN=NORK PE=1 SV=2 | 0 | |
| TrEMBL | A0A2R6RKU0 | Nodulation receptor kinase OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc05918 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 1.93984 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 2.51332 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 3.07384 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 3.907794 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 3.788243 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 1.675135 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 1.043294 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0.473339 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 0.396461 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 0.270369 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 0.391857 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 0.388968 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 0.538227 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 0.409672 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 1.216581 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 1.241957 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 0.998945 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 5.204892 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 3.361749 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 10.298166 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 18.126921 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 0.787582 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 0.245216 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 0.653427 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 0.347321 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 2.979369 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 0.896412 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 1.818693 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 1.057888 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0.049174 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0.039024 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0.463361 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 0.563972 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 1.358341 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 17.655859 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0.194222 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 6.400287 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 0.314105 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0.367016 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0.45582 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 15.956787 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 13.041622 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 32.862892 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 23.30505 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 20.702908 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 21.434866 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 0.610912 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 0.772096 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 0.180951 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg17317 |
| Apiaceae | Apium graveolens | 3 | Ag4G01225, Ag5G00375, Ag7G00972 |
| Arecaceae | Cocos nucifera | 1 | COCNU_06G014740 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103714442 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_03.1047.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri18G32454 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G0389 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G0398 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-10102 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.2655 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00030007 |
| Poaceae | Echinochloa crus-galli | 3 | AH03.3441, BH03.3596, CH03.3800 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_7AG0573170, gene-QOZ80_7BG0604470 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0133680.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_040451, gene-QYE76_040484 |
| Poaceae | Oryza coarctata | 2 | Oco13G010350, Oco14G010990 |
| Poaceae | Oryza sativa | 1 | LOC_Os07g38070.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G319400 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0304399, Pt_Chr0304464 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr10G010420, Chr19G004110, Chr20G009610, Chr24G010410 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G381300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG025760, gene_TRIDC2BG030300 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G200300.1, TraesCS2B02G227700.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb324630_P002 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-10579, nbis-gene-654 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g5375, Zma_g6684 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_3_RagTag.1146 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-828 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-1307, nbisL1-mrna-2785 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-12038, nbisL1-mrna-2399 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000011l.1051, evm.TU.utg000019l.554 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00002217 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-3356 |
| Salicaceae | Populus euphratica | 1 | populus_peu23775 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132623740 |
| Solanaceae | Solanum chilense | 1 | SOLCI000782800 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107009482 |