Basic Information
Locus ID:
Ag5G00338
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Peptidyl-prolyl cis-trans
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 6999223 | 7005289 | + | Ag5G00338 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.28 | 66,462.25 Da | 32.64 | 70.85 | -0.61 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16663 | RING-Ubox_PPIL2 | 38 | 110 | 1.11951E-45 | IPR026951 |
| CDD | cd01923 | cyclophilin_RING | 350 | 508 | 8.96248E-109 | - |
| Pfam | PF00160 | Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD | 350 | 501 | 9.2E-50 | IPR002130 |
| Pfam | PF04564 | U-box domain | 39 | 89 | 1.1E-4 | IPR003613 |
| SUPERFAMILY | SSF50891 | Cyclophilin-like | 350 | 509 | 5.84E-64 | IPR029000 |
| SUPERFAMILY | SSF57850 | RING/U-box | 37 | 104 | 4.41E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 40 | 96 | 1.6E-16 | IPR013083 |
| Gene3D | G3DSA:2.40.100.10 | - | 332 | 515 | 3.9E-73 | IPR029000 |
| SMART | SM00504 | Ubox_2 | 39 | 101 | 3.8E-11 | IPR003613 |
| ProSiteProfiles | PS50072 | Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. | 354 | 501 | 32.172123 | IPR002130 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 35 | 108 | 28.626451 | IPR003613 |
| ProSitePatterns | PS00170 | Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. | 385 | 402 | - | IPR020892 |
| PRINTS | PR00153 | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 448 | 460 | 1.9E-23 | IPR002130 |
| PRINTS | PR00153 | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 390 | 402 | 1.9E-23 | IPR002130 |
| PRINTS | PR00153 | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 364 | 379 | 1.9E-23 | IPR002130 |
| PRINTS | PR00153 | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 461 | 476 | 1.9E-23 | IPR002130 |
| PRINTS | PR00153 | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 433 | 448 | 1.9E-23 | IPR002130 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 516 | 535 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 510 | 571 | - | - |
| Coils | Coil | Coil | 507 | 531 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G67530.1 | plant U-box 49. | 0 |
| RefSeq | XP_017215279.1 | PREDICTED: peptidyl-prolyl cis-trans isomerase CYP65 [Daucus carota subsp. sativus] | 0 |
| Q9FJX0 | Peptidyl-prolyl cis-trans isomerase CYP65 OS=Arabidopsis thaliana OX=3702 GN=CYP65 PE=2 SV=1 | 0 | |
| TrEMBL | A0A067K7H8 | RING-type E3 ubiquitin transferase OS=Jatropha curcas OX=180498 GN=JCGZ_12538 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 19.894997 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 15.34691 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 20.471203 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 21.444895 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 21.486593 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 26.971251 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 22.184731 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 23.748343 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 25.066406 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 26.798037 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 26.674164 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 30.500862 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 27.16168 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 21.97105 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 11.18986 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 13.86558 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 12.138783 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 14.299574 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 10.598049 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 13.214122 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 15.477848 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 12.942237 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 18.303106 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 14.329106 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 15.249024 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 15.176873 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 14.424672 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 13.721703 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 14.905842 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 4.994667 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 7.456303 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 6.309155 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 7.309306 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 12.892168 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 7.783037 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 7.620716 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 3.77658 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 5.118458 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 18.29784 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 9.468145 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 7.803311 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 21.560217 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 21.684326 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 28.422695 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 26.572277 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 19.721018 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 21.944578 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 16.345823 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 17.401291 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 14.857812 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg39936 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah027530 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g128200 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg13177, Sbi_jg52668 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg9184 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00010104 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl34592, Sgl40007 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000002529, gene:ENSEOMG00000027428 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0026310, CQ.Regalona.r1.6BG0027740 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30205020 |
| Apiaceae | Apium graveolens | 1 | Ag5G00338 |
| Arecaceae | Cocos nucifera | 1 | COCNU_13G007120 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103716969, gene-LOC120108652 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_08.1219.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri18G03693 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G67530.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10003864m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g29120.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB06g014330.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G1433 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G1434 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno14g10050 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0225s00017.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g09830 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-10081 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.2567 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00023789 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G05471 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.4625, CH01.5188, Contig181.37 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0237650, gene-QOZ80_3BG0290270 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0398950.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_069990, gene-QYE76_070125 |
| Poaceae | Oryza coarctata | 1 | Oco06G005820 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g10400.2 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G445000 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0101572 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr01G026770, Chr04G001880, Chr07G009390, Chr12G012590 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G438900 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG006280, gene_TRIDC4BG044950 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G045200.1, TraesCS4B02G260100.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb007780_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-2581 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g1848 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG03.1859, evm.TU.LG14.31 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g18040 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_6_RagTag.1783 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-17372 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-17205 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-11981 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000011l.1085 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00008166 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-15442 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-3300, nbisL1-mrna-3301 |
| Salicaceae | Populus euphratica | 2 | populus_peu19201, populus_peu37095 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132622067 |
| Solanaceae | Solanum chilense | 1 | SOLCI005473200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107012010 |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G2031 |
| Zosteraceae | Zostera marina | 1 | Zosma05g24550.v3.1 |