Basic Information
Locus ID:
Ag5G00301
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Microtubule-associated protein RP EB family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 5625048 | 5628311 | - | Ag5G00301 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.07 | 36,379.06 Da | 56.37 | 79.54 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03271 | EB1-like C-terminal motif | 206 | 244 | 1.3E-18 | IPR004953 |
| Pfam | PF00307 | Calponin homology (CH) domain | 16 | 109 | 8.0E-11 | IPR001715 |
| SUPERFAMILY | SSF47576 | Calponin-homology domain, CH-domain | 5 | 132 | 3.14E-43 | IPR036872 |
| SUPERFAMILY | SSF140612 | EB1 dimerisation domain-like | 191 | 248 | 6.93E-20 | IPR036133 |
| Gene3D | G3DSA:1.10.418.10 | - | 6 | 134 | 2.9E-53 | IPR036872 |
| Gene3D | G3DSA:1.20.5.1430 | - | 190 | 268 | 1.3E-24 | - |
| ProSiteProfiles | PS51230 | EB1-C terminal (EB1-C) domain profile. | 181 | 251 | 15.250612 | IPR004953 |
| ProSiteProfiles | PS50021 | Calponin homology (CH) domain profile. | 13 | 115 | 17.853554 | IPR001715 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 124 | 187 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 125 | 140 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 168 | 183 | - | - |
| Coils | Coil | Coil | 189 | 209 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G67270.1 | end binding protein 1C. encodes a homolog of animal microtubule-end-binding protein. There are two other members of this family. EB1 forms foci at regions where the minus ends of microtubules are gathered during mitosis and early cytokinesis. | 0 |
| RefSeq | XP_017216440.1 | PREDICTED: microtubule-associated protein RP/EB family member 1C [Daucus carota subsp. sativus] | 0 |
| Q9FGQ6 | Microtubule-associated protein RP/EB family member 1C OS=Arabidopsis thaliana OX=3702 GN=EB1C PE=1 SV=1 | 0 | |
| TrEMBL | A0A164UBS1 | Microtubule-associated protein RP/EB family member 1C OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_025756 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 12.727942 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 2.639798 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 2.622472 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 2.286336 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 3.908276 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 0.390714 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 1.399117 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 1.526046 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 75.369545 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 70.451736 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 76.028633 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 62.100719 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 45.532791 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 46.018749 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 1.713356 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 4.30588 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 17.350084 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 5.849647 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 4.91095 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 3.244777 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 4.43205 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 26.722916 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 32.482849 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 45.036133 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 31.572783 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 11.739438 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 12.204734 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 14.266305 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 16.725042 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 1.608623 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 1.229478 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 1.994752 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 58.303074 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0.360069 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 1.358752 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.931952 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 33.298477 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 1.216644 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0.484664 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0.126033 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0.913463 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 0.942754 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 1.91842 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0.500155 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 2.452717 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 57.233635 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 44.874069 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 39.800167 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg17398, jg18617, jg39995 |
| Aizoaceae | Mesembryanthemum crystallinum | 3 | gene_13865, gene_16709, gene_19615 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah000921, Ah036893 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_1g015560, BVRB_6g127450 |
| Amaranthaceae | Salicornia bigelovii | 7 | Sbi_jg13085, Sbi_jg31161, Sbi_jg31162, Sbi_jg39476 ... |
| Amaranthaceae | Salicornia europaea | 3 | Seu_jg14859, Seu_jg25727, Seu_jg9079 |
| Amaranthaceae | Suaeda aralocaspica | 3 | GOSA_00004599, GOSA_00010175, GOSA_00019618 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl12914, Sgl33880, Sgl39252 |
| Amaranthaceae | Chenopodium album | 7 | gene:ENSEOMG00000000342, gene:ENSEOMG00000005345 ... |
| Amaranthaceae | Chenopodium quinoa | 5 | CQ.Regalona.r1.1AG0017760, CQ.Regalona.r1.5AG0021020 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30137360 |
| Apiaceae | Apium graveolens | 2 | Ag5G00301, Ag5G00604 |
| Arecaceae | Cocos nucifera | 2 | COCNU_05G006950, scaffold016872G000010 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103719185, gene-LOC103720225 |
| Asparagaceae | Asparagus officinalis | 8 | AsparagusV1_01.1578.V1.1, AsparagusV1_01.927.V1.1 ... |
| Asteraceae | Flaveria trinervia | 3 | Ftri16G30079, Ftri17G09740, Ftri6G21784 |
| Brassicaceae | Arabidopsis thaliana | 3 | AT3G47690.1, AT5G62500.1, AT5G67270.1 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10004586m.g.v1.0, Thhalv10004754m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 3 | Sp2g25680.v2.2, Sp2g29390.v2.2, Sp5g14240.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB04g002220.2N, BniB06g010780.2N, BniB07g043740.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq04G1789, Ceq05G1358 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl04G1967, Cgl05G1363 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno09g05300, gene.Cymno10g01670 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0059s00027.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 4 | gene.Thate03g09850, gene.Thate04g05620, gene.Thate09g00990 ... |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-7111 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG02.2083, evm.TU.LG10.923 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00018963, Pov_00029168 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb5G26686, Lb7G34433 |
| Poaceae | Echinochloa crus-galli | 8 | AH01.1696, AH02.2052, AH09.2470, BH01.1895, BH09.2691 ... |
| Poaceae | Eleusine coracana subsp. coracana | 5 | gene-QOZ80_2AG0112520, gene-QOZ80_2BG0165900 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.1HG0047290.1, HORVU.MOREX.r3.2HG0205940.1 |
| Poaceae | Lolium multiflorum | 4 | gene-QYE76_010516, gene-QYE76_011854, gene-QYE76_046646 ... |
| Poaceae | Oryza coarctata | 4 | Oco07G017200, Oco08G016590, Oco19G007180, Oco20G007140 |
| Poaceae | Oryza sativa | 2 | LOC_Os04g54940.1, LOC_Os10g35580.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_01G187100, gene-BS78_06G254300 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0300823, Pt_Chr0502808 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr06G030180, Chr09G001980, Chr15G021480, Chr23G002710 ... |
| Poaceae | Thinopyrum elongatum | 3 | Tel1E01G307500, Tel2E01G067900, Tel2E01G887200 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC1AG025910, gene_TRIDC1BG031100 ... |
| Poaceae | Triticum aestivum | 11 | TraesCS1A02G170100.1, TraesCS1B02G186800.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb044540_P001, Zm00001eb068860_P001 |
| Poaceae | Zoysia japonica | 4 | nbis-gene-22981, nbis-gene-43970, nbis-gene-45327 ... |
| Poaceae | Zoysia macrostachya | 3 | Zma_g12693, Zma_g15209, Zma_g20536 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG02.822, evm.TU.LG03.687, evm.TU.LG09.1997 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc04g13840, gene.Posoc06g04280 |
| Rhizophoraceae | Bruguiera sexangula | 4 | evm.TU.60424.2, evm.TU.Scaffold_11_RagTag.909 ... |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-14586, nbisL1-mrna-17302 |
| Rhizophoraceae | Ceriops tagal | 3 | nbisL1-mrna-14728, nbisL1-mrna-15141, nbisL1-mrna-20331 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-11936, nbisL1-mrna-12485 |
| Rhizophoraceae | Kandelia candel | 3 | evm.TU.utg000010l.39, evm.TU.utg000011l.1122 ... |
| Rhizophoraceae | Kandelia obovata | 3 | Maker00007394, Maker00008584, Maker00012857 |
| Rhizophoraceae | Rhizophora apiculata | 3 | nbisL1-mrna-15479, nbisL1-mrna-6407, nbisL1-mrna-824 |
| Rhizophoraceae | Rhizophora mangle | 3 | nbisL1-mrna-2195, nbisL1-mrna-3252, nbisL1-mrna-8551 |
| Salicaceae | Populus euphratica | 5 | populus_peu14427, populus_peu23351, populus_peu28511 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132623879, gene-LOC132632969 |
| Solanaceae | Solanum chilense | 1 | SOLCI004061400 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107009156, gene-LOC107012864 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.14826_chr08_+, STRG.30989_chr11_- |
| Tamaricaceae | Tamarix chinensis | 3 | TC04G1802, TC04G2585, TC05G1107 |
| Zosteraceae | Zostera marina | 2 | Zosma03g33480.v3.1, Zosma05g24130.v3.1 |