Basic Information
Locus ID:
Ag5G00291
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Histone-lysine n-methyltransferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 5011509 | 5020824 | - | Ag5G00291 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.19 | 72,371.38 Da | 49.29 | 60.77 | -0.84 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10519 | SET_EZH | 421 | 537 | 7.97529E-64 | - |
| Pfam | PF00856 | SET domain | 432 | 535 | 8.7E-12 | IPR001214 |
| Pfam | PF18264 | CXC domain | 359 | 389 | 3.7E-7 | IPR041355 |
| SUPERFAMILY | SSF82199 | SET domain | 318 | 539 | 1.11E-49 | - |
| Gene3D | G3DSA:2.170.270.10 | SET domain | 321 | 537 | 7.3E-62 | - |
| SMART | SM00317 | set_7 | 421 | 542 | 3.2E-27 | IPR001214 |
| SMART | SM01114 | CXC_2 | 355 | 392 | 2.6E-4 | IPR033467 |
| ProSiteProfiles | PS51633 | CXC domain profile. | 307 | 406 | 20.466198 | IPR026489 |
| ProSiteProfiles | PS50280 | SET domain profile. | 421 | 536 | 14.650696 | IPR001214 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 27 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 548 | 639 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Reaction:
R03875 (Protein lysine + S-Adenosyl-L-methionine <=> Protein N6-methyl-L-lysine + S-Adenosyl-L-homocysteine)
R03938 (S-Adenosyl-L-methionine + Histone-L-lysine <=> S-Adenosyl-L-homocysteine + Histone N6-methyl-L-lysine)
R04866 (S-Adenosyl-L-methionine + Protein N6-methyl-L-lysine <=> S-Adenosyl-L-homocysteine + Protein N6,N6-dimethyl-L-lysine)
R04867 (S-Adenosyl-L-methionine + Protein N6,N6-dimethyl-L-lysine <=> S-Adenosyl-L-homocysteine + Protein N6,N6,N6-trimethyl-L-lysine)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G23380.2 | - | 0 |
| RefSeq | XP_045811571.1 | histone-lysine N-methyltransferase CLF isoform X2 [Trifolium pratense] | 0 |
| P93831 | Histone-lysine N-methyltransferase CLF OS=Arabidopsis thaliana OX=3702 GN=CLF PE=1 SV=2 | 0 | |
| TrEMBL | A0A2J6K7N6 | [Histone H3]-lysine(27) N-trimethyltransferase OS=Lactuca sativa OX=4236 GN=LSAT_2X85201 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 10.231712 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 7.83215 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 8.520963 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 8.291091 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 8.573339 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 10.2179 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 9.465493 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 7.39842 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 9.776743 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 10.253953 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 8.633918 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 12.35397 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 14.300323 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 12.962833 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 5.636056 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 4.32434 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 5.832421 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 5.858154 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 5.607804 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 4.480287 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 6.130378 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 8.614779 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 8.146316 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 8.200963 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 7.672212 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 7.985215 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 5.971057 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 5.867269 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 7.944961 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 3.026689 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 3.979126 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 3.227154 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 5.206716 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 6.003037 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 6.095699 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 3.987953 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 1.916643 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 2.211589 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 4.16606 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 3.990952 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 3.944416 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 5.994041 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 7.345436 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 17.12339 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 15.424846 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 7.714786 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 15.855527 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 15.250163 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 15.660014 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 18.480907 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg35113, jg40015 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_15041, gene_19265 |
| Amaranthaceae | Atriplex hortensis | 4 | Ah000105, Ah004342, Ah005404, Ah005405 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_5g106820, BVRB_5g121850 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg24543, Sbi_jg31326, Sbi_jg57960, Sbi_jg8391 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg11656, Seu_jg25585 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00004473, GOSA_00010875 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl51274, Sgl54528, Sgl56576, Sgl59869 |
| Amaranthaceae | Chenopodium album | 7 | gene:ENSEOMG00000005614, gene:ENSEOMG00000007252 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.5AG0002010, CQ.Regalona.r1.5AG0027020 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30008100, pistato.v30206130 |
| Apiaceae | Apium graveolens | 4 | Ag4G01104, Ag5G00291, Ag5G02886, Ag9G02327 |
| Arecaceae | Cocos nucifera | 3 | COCNU_08G005060, COCNU_11G000180, COCNU_16G004410 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103696622, gene-LOC103713764, gene-LOC103724029 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_07.1673.V1.1, AsparagusV1_08.1457.V1.1 |
| Asteraceae | Flaveria trinervia | 4 | Ftri10G00317, Ftri15G03347, Ftri17G16197, Ftri18G17065 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT2G23380.1, AT4G02020.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10000037m.g.v1.0, Thhalv10028423m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp4g02390.v2.2, Sp6g01900.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB01g020410.2N, BniB08g044480.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq05G1333, Ceq06G1050 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl05G1338, Cgl06G1092 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno15g06510, gene.Cymno18g03860 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0011s00040.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate02g09320, gene.Thate05g09090 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG02.2109, evm.TU.LG04.450 |
| Plantaginaceae | Plantago ovata | 3 | Pov_00024947, Pov_00029191, Pov_00029199 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb8G36103, Lb8G36104, Lb8G36105 |
| Poaceae | Echinochloa crus-galli | 6 | AH01.3875, AH06.370, BH01.4213, BH06.488, CH01.4500 ... |
| Poaceae | Eleusine coracana subsp. coracana | 5 | gene-QOZ80_3AG0245610, gene-QOZ80_3AG0245620 ... |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.4HG0382250.1, HORVU.MOREX.r3.7HG0655900.1 ... |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_028415, gene-QYE76_063025, gene-QYE76_068467 |
| Poaceae | Oryza coarctata | 3 | Oco06G014810, Oco11G007280, Oco12G007370 |
| Poaceae | Oryza sativa | 2 | LOC_Os03g19480.1, LOC_Os06g16390.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_01G377500, gene-BS78_10G055000 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0102572, Pt_Chr0105706, Pt_Chr0402067, Pt_Chr0402103 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr01G032910, Chr04G009580, Chr11G022110, Chr12G006670 ... |
| Poaceae | Thinopyrum elongatum | 3 | Tel4E01G329400, Tel7E01G260300, Tel7E01G260700 |
| Poaceae | Triticum dicoccoides | 5 | gene_TRIDC4AG017090, gene_TRIDC4BG031660 ... |
| Poaceae | Triticum aestivum | 9 | TraesCS4A02G121300.4, TraesCS4B02G181400.3 ... |
| Poaceae | Zea mays | 3 | Zm00001eb014730_P001, Zm00001eb271490_P005 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-3518, nbis-gene-5096 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g29163, Zma_g3769 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG02.1253, evm.TU.LG09.719, evm.TU.LG10.688 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc07g04650, gene.Posoc07g12580 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_6_RagTag.1859, evm.TU.Scaffold_9_RagTag.749 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-17281, nbisL1-mrna-21472 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-20015, nbisL1-mrna-8423 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-11917, nbisL1-mrna-18542 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000003l.629, evm.TU.utg000011l.1134 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00007791, Maker00009601 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-15493, nbisL1-mrna-1612 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-3234, nbisL1-mrna-5293 |
| Salicaceae | Populus euphratica | 4 | populus_peu14405, populus_peu23376, populus_peu27351 ... |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132616927, gene-LOC132623421, gene-LOC132644930 |
| Solanaceae | Solanum chilense | 3 | SOLCI000735100, SOLCI000869500, SOLCI001076900 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107001506, gene-LOC107011481, gene-LOC107014997 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_17331, gene_3847 |
| Tamaricaceae | Tamarix chinensis | 3 | TC04G1756, TC07G1795, TC07G2777 |
| Zosteraceae | Zostera marina | 2 | Zosma02g18570.v3.1, Zosma05g30470.v3.1 |