Basic Information
Locus ID:
Ag5G00242
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Cell division cycle-associated protein 7-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 3667842 | 3672219 | - | Ag5G00242 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.08 | 50,754.97 Da | 42.46 | 64.35 | -0.86 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF10497 | Zinc-finger domain of monoamine-oxidase A repressor R1 | 153 | 249 | 1.0E-37 | IPR018866 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 292 | 341 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 398 | 453 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 398 | 423 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 292 | 321 | - | - |
| Coils | Coil | Coil | 7 | 27 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G37110.2 | - | 0 |
| RefSeq | XP_017215908.1 | PREDICTED: uncharacterized protein LOC108193665 [Daucus carota subsp. sativus] | 0 |
| Q96GN5 | Cell division cycle-associated 7-like protein OS=Homo sapiens OX=9606 GN=CDCA7L PE=1 SV=2 | 0 | |
| TrEMBL | A0A161ZQ85 | zf-4CXXC_R1 domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_025685 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 0.608617 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 4.492092 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 2.706167 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 2.228452 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 2.203645 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 1.631202 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 1.449749 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 1.53939 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 17.630184 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 17.24926 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 18.336353 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 18.830843 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 12.773249 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 14.274521 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 0.11657 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 0.663152 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 1.882927 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 0.55843 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 1.205179 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 1.256061 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 0.785909 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 6.241086 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 5.052801 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 7.255058 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 7.167396 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 2.818959 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 4.411793 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 2.644059 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 3.926002 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0.086974 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0.526793 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0.21224 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0.197764 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 6.798706 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0.192331 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0.17852 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0.134067 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.329813 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 9.075824 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0.364428 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0.247589 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0.293606 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 0.496916 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 0.21655 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0.979387 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 0.681058 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 12.833467 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 12.904561 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 9.300464 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg17480 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_16488, gene_26379 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah010346, Ah024632 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_6g134760, BVRB_9g218390 |
| Amaranthaceae | Salicornia bigelovii | 6 | Sbi_jg12521, Sbi_jg13362, Sbi_jg13364, Sbi_jg45792 ... |
| Amaranthaceae | Salicornia europaea | 3 | Seu_jg20151, Seu_jg9358, Seu_jg9360 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00010283, GOSA_00019707 |
| Amaranthaceae | Suaeda glauca | 5 | Sgl33792, Sgl33804, Sgl39171, Sgl45391, Sgl50183 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000003377, gene:ENSEOMG00000004066 ... |
| Amaranthaceae | Chenopodium quinoa | 5 | CQ.Regalona.r1.5AG0019540, CQ.Regalona.r1.6AG0024530 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30207040 |
| Apiaceae | Apium graveolens | 4 | Ag5G00241, Ag5G00242, Ag7G01275, AgUnG00070 |
| Arecaceae | Cocos nucifera | 1 | COCNU_05G000050 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103707543 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_08.1377.V1.1, AsparagusV1_08.1446.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri14G24981, Ftri18G24907, Ftri7G00032 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT2G23530.1, AT4G37110.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10000497m.g.v1.0, Thhalv10025333m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp4g02500.v2.2, Sp7g34660.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB01g020270.2N, BniB05g001840.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G1655 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G1697 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno11g03600 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0064s00025.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate03g05410, gene.Thate05g15310 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.2214 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00029328 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G05972, Lb8G35906 |
| Poaceae | Echinochloa crus-galli | 3 | AH04.1671, BH04.1664, CH04.1902 |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_1AG0029730, gene-QOZ80_9AG0685240 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0239970.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_066518 |
| Poaceae | Oryza coarctata | 2 | Oco06G018530, Oco21G007340 |
| Poaceae | Oryza sativa | 2 | LOC_Os03g37570.1, LOC_Os11g36030.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_05G181500 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0103135 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr07G016090, Chr16G005710, Chr17G005110, Chr31G006870 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G209600 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG015180, gene_TRIDC3BG019750 |
| Poaceae | Triticum aestivum | 4 | TraesCS3A02G121700.1, TraesCS3B02G141100.1 ... |
| Poaceae | Zea mays | 4 | Zm00001eb114140_P001, Zm00001eb191630_P001 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-44228, nbis-gene-45780 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g18975 |
| Portulacaceae | Portulaca oleracea | 5 | evm.TU.LG05.618, evm.TU.LG06.733, evm.TU.LG08.1877 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc04g06980 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_1_RagTag.2142, evm.TU.Scaffold_3_RagTag.313 |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-553, nbisL1-mrna-5950, nbisL1-mrna-635 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-1698 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-6036 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000016l.183, evm.TU.utg000019l.1058 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00012646 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-6461 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-2271 |
| Salicaceae | Populus euphratica | 3 | populus_peu14266, populus_peu23467, populus_peu36403 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132615811, gene-LOC132621974 |
| Solanaceae | Solanum chilense | 2 | SOLCI001646400, SOLCI003385600 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107006729, gene-LOC107009091 |
| Tamaricaceae | Reaumuria soongarica | 4 | STRG.1074_chr01_+, STRG.4371_chr03_+, gene_11723, gene_2798 |
| Tamaricaceae | Tamarix chinensis | 4 | TC04G2160, TC05G0857, TC10G0539, TC11G0511 |
| Zosteraceae | Zostera marina | 1 | Zosma03g02860.v3.1 |