Basic Information
Locus ID:
Ag5G00216
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
At4g14100-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 3116212 | 3119680 | + | Ag5G00216 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.26 | 26,080.41 Da | 38.13 | 80.70 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Coils | Coil | Coil | 227 | 227 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G23760.1 | 0 | |
| RefSeq | XP_017249888.1 | PREDICTED: uncharacterized protein At4g14100-like [Daucus carota subsp. sativus] | 0 |
| Q67YC9 | Uncharacterized protein At4g14100 OS=Arabidopsis thaliana OX=3702 GN=At4g14100 PE=2 SV=1 | 0 | |
| TrEMBL | A0A164XF12 | BtrH_N domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_016333 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 35.328804 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 37.744289 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 32.162632 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 30.962599 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 30.046293 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 62.822483 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 25.311829 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 34.623199 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 32.2925 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 32.300526 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 38.953468 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 25.071112 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 27.637619 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 30.644499 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 59.232292 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 32.72974 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 47.269947 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 27.523085 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 37.21777 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 46.571709 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 41.388355 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 24.671669 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 16.359983 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 19.918301 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 22.068237 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 32.932617 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 18.363285 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 49.359615 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 38.558796 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 60.466404 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 74.457878 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 67.064613 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 124.826698 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 69.182343 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 115.464333 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 97.306061 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 64.494118 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 70.061607 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 55.276012 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 86.144966 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 120.577843 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 14.991079 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 19.354675 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 13.300889 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 41.483395 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 9.7901 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 35.687988 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 41.079556 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 30.509333 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 37.167515 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg25510, jg34435 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_17969 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah014038, Ah014039 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g149590 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg42623, Sbi_jg42626, Sbi_jg45246, Sbi_jg45249 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg26919, Seu_jg26922 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00002664 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl35463, Sgl35465, Sgl40875, Sgl40876 |
| Amaranthaceae | Chenopodium album | 7 | gene:ENSEOMG00000001099, gene:ENSEOMG00000003721 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.6AG0001900, CQ.Regalona.r1.6AG0001910 ... |
| Anacardiaceae | Pistacia vera | 3 | pistato.v30012710, pistato.v30167670, pistato.v30241950 |
| Apiaceae | Apium graveolens | 4 | Ag4G00034, Ag4G00035, Ag5G00216, Ag5G02336 |
| Arecaceae | Cocos nucifera | 3 | COCNU_02G015880, scaffold014119G000020 ... |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103712387, gene-LOC120112197 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_09.1511.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri7G21315, Ftri9G32351 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT3G23760.1, AT4G14100.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10002677m.g.v1.0, Thhalv10026167m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp3g21470.v2.2, Sp7g11890.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB01g037850.2N, BniB04g051450.2N |
| Casuarinaceae | Casuarina equisetifolia | 3 | Ceq01G1924, Ceq03G1197, Ceq05G0598 |
| Casuarinaceae | Casuarina glauca | 3 | Cgl03G1302, Cgl05G0620, Cgl07G0966 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g02060 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0327s00012.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g26340 |
| Nitrariaceae | Nitraria sibirica | 4 | evm.TU.LG02.963, evm.TU.LG02.964, evm.TU.LG05.543 ... |
| Plantaginaceae | Plantago ovata | 2 | Pov_00019496, Pov_00020062 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb6G30264 |
| Poaceae | Echinochloa crus-galli | 12 | AH01.588, AH03.2958, AH03.472, BH03.3131, BH03.578, BH03.579 ... |
| Poaceae | Eleusine coracana subsp. coracana | 5 | gene-QOZ80_3AG0208270, gene-QOZ80_3BG0253280 ... |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.3HG0232360.1, HORVU.MOREX.r3.5HG0534340.1 ... |
| Poaceae | Lolium multiflorum | 5 | gene-QYE76_001848, gene-QYE76_041385, gene-QYE76_041405 ... |
| Poaceae | Oryza coarctata | 8 | Oco06G030000, Oco13G003010, Oco13G007080, Oco14G003280 ... |
| Poaceae | Oryza sativa | 6 | LOC_Os03g63380.1, LOC_Os07g09140.1, LOC_Os07g09150.1 ... |
| Poaceae | Paspalum vaginatum | 4 | gene-BS78_01G010000, gene-BS78_02G064200 ... |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0107964, Pt_Chr0107972, Pt_Chr0303757, Pt_Chr0306617 |
| Poaceae | Sporobolus alterniflorus | 7 | Chr14G003920, Chr19G016770, Chr19G016780, Chr19G016790 ... |
| Poaceae | Thinopyrum elongatum | 4 | Tel3E01G151100, Tel3E01G151300, Tel5E01G843800 ... |
| Poaceae | Triticum dicoccoides | 5 | gene_TRIDC3BG013840, gene_TRIDC4AG050400 ... |
| Poaceae | Triticum aestivum | 11 | TraesCS3A02G084900.1, TraesCS3B02G099800.1 ... |
| Poaceae | Zea mays | 4 | Zm00001eb064550_P001, Zm00001eb302350_P002 ... |
| Poaceae | Zoysia japonica | 7 | nbis-gene-1078, nbis-gene-15658, nbis-gene-26744 ... |
| Poaceae | Zoysia macrostachya | 5 | Zma_g55, Zma_g6131, Zma_g6132, Zma_g6133, Zma_g6411 |
| Portulacaceae | Portulaca oleracea | 6 | evm.TU.LG10.379, evm.TU.LG10.381, evm.TU.LG17.377 ... |
| Posidoniaceae | Posidonia oceanica | 4 | gene.Posoc01g04540, gene.Posoc01g04550, gene.Posoc05g14620 ... |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_15_RagTag.940 |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-13337, nbisL1-mrna-27123, nbisL1-mrna-27309 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000001l.528 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00002586 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-11125, nbisL1-mrna-16615 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-17601 |
| Salicaceae | Populus euphratica | 4 | populus_peu03898, populus_peu05487, populus_peu05492 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132625799, gene-LOC132633139 |
| Solanaceae | Solanum chilense | 3 | SOLCI000879200, SOLCI003466500, SOLCI006355700 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107011408, gene-LOC107014800, gene-LOC107023670 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.23035_chr05_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G3704 |
| Zosteraceae | Zostera marina | 1 | Zosma01g25750.v3.1 |