halophFGD

Basic Information

Locus ID: Ag5G00163

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Protein kinase domain

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr5	2286711	2289817	+	Ag5G00163

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
7.63	49,508.15 Da	36.34	107.48	0.03

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00069	Protein kinase domain	157	424	4.7E-42	IPR000719
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	140	425	4.18E-73	IPR011009
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	232	430	8.5E-55	-
Gene3D	G3DSA:3.30.200.20	Phosphorylase Kinase; domain 1	125	231	4.4E-28	-
SMART	SM00220	serkin_6	156	427	8.4E-35	IPR000719
ProSiteProfiles	PS50011	Protein kinase domain profile.	156	427	36.244537	IPR000719
ProSitePatterns	PS00107	Protein kinases ATP-binding region signature.	162	184	-	IPR017441
ProSitePatterns	PS00108	Serine/Threonine protein kinases active-site signature.	277	289	-	IPR008271
Coils	Coil	Coil	449	449	-	-

Gene Ontology

Biological Process:

GO:0006468 (protein phosphorylation)

Molecular Function:

GO:0004672 (protein kinase activity) GO:0005524 (ATP binding)

KEGG Pathway

KO Term:

K04733 (interleukin-1 receptor-associated kinase 4 [EC:2.7.11.1])

Pathway:

ko04010 (MAPK signaling pathway) map04010 (MAPK signaling pathway) map04064 (NF-kappa B signaling pathway) map04620 (Toll-like receptor signaling pathway) map04621 (NOD-like receptor signaling pathway) ko04624 (Toll and Imd signaling pathway) map04624 (Toll and Imd signaling pathway)

Best hit

Source	Best Hit ID	Description
TAIR	AT4G32000.1	Protein kinase superfamily protein.
RefSeq	XP_017216087.1	PREDICTED: probable receptor-like protein kinase At1g80640 isoform X1 [Daucus carota subsp. sativus]
Swiss-Prot	Q0V7T5	Probable receptor-like protein kinase At1g80640 OS=Arabidopsis thaliana OX=3702 GN=At1g80640 PE=2 SV=1
TrEMBL	A0A161ZME0	Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_025587 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	10.804983	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	14.71891	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	18.774714	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	14.596943	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	20.023781	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	3.667121	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	11.942799	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	3.656123	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	9.117081	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	11.065166	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	11.628186	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	8.681189	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	7.865117	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	8.688757	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	28.829252	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	33.834961	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	37.255688	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	16.640707	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	14.973761	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	14.459544	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	16.881077	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	24.892403	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	21.180738	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	24.544861	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	20.16684	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	17.239414	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	16.650988	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	15.735188	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	20.357719	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	1.672201		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	2.529224		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	3.404905		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	1.75035		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	4.008404		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	1.721787		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	0.387424		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	0.656374		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	1.202451		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	4.255355	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	5.552123	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	3.996938	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	5.173344	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	6.37637	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	1.042916	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	2.863343	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	3.674661	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	10.135828	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	13.908191	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	10.942304	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	14.369424	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	4	jg16536, jg18291, jg23341, jg25472
Aizoaceae	Mesembryanthemum crystallinum	2	gene_26260, gene_8199
Amaranthaceae	Atriplex hortensis	1	Ah034811
Amaranthaceae	Beta vulgaris	1	BVRB_2g031070
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg11657, Sbi_jg21091, Sbi_jg22713, Sbi_jg46742
Amaranthaceae	Salicornia europaea	2	Seu_jg16586, Seu_jg20912
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00005109, GOSA_00018297
Amaranthaceae	Suaeda glauca	5	Sgl56008, Sgl60651, Sgl61201, Sgl62383, Sgl66930
Amaranthaceae	Chenopodium album	3	gene:ENSEOMG00000016588, gene:ENSEOMG00000020754 ... gene:ENSEOMG00000050232
Amaranthaceae	Chenopodium quinoa	2	CQ.Regalona.r1.1BG0021780, CQ.Regalona.r1.2AG0023540
Anacardiaceae	Pistacia vera	2	pistato.v30129650, pistato.v30250650
Apiaceae	Apium graveolens	3	Ag4G00091, Ag5G00163, Ag7G01345
Arecaceae	Cocos nucifera	2	COCNU_01G005540, COCNU_08G003860
Arecaceae	Phoenix dactylifera	4	gene-LOC103703658, gene-LOC103706568, gene-LOC120104241 ... gene-LOC120106206
Asparagaceae	Asparagus officinalis	2	AsparagusV1_05.3340.V1.1, AsparagusV1_08.801.V1.1
Asteraceae	Flaveria trinervia	4	Ftri10G32678, Ftri16G10975, Ftri16G14156, Ftri18G10731
Brassicaceae	Arabidopsis thaliana	4	AT1G80640.1, AT2G25220.2, AT4G32000.2, AT5G11020.1
Brassicaceae	Eutrema salsugineum	4	Thhalv10000655m.g.v1.0, Thhalv10013829m.g.v1.0 ... Thhalv10018582m.g.v1.0, Thhalv10025398m.g.v1.0
Brassicaceae	Schrenkiella parvula	4	Sp4g04340.v2.2, Sp5g35120.v2.2, Sp6g32470.v2.2 ... Sp7g29800.v2.2
Brassicaceae	Brassica nigra	4	BniB01g018060.2N, BniB02g050980.2N, BniB05g075430.2N ... BniB06g068320.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq02G0376, Ceq04G2451
Casuarinaceae	Casuarina glauca	2	Cgl02G0396, Cgl04G2677
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno06g07980
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate04g09050
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-698
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG01.794, evm.TU.LG07.1500
Plantaginaceae	Plantago ovata	2	Pov_00020172, Pov_00034508
Plumbaginaceae	Limonium bicolor	2	Lb1G04732, Lb1G04737
Poaceae	Echinochloa crus-galli	9	AH06.2455, AH07.605, AH08.1087, BH06.2253, BH07.728 ... BH08.1040, CH05.3041, CH06.2480, CH08.1146
Poaceae	Eleusine coracana subsp. coracana	5	gene-QOZ80_2AG0103970, gene-QOZ80_2BG0157270 ... gene-QOZ80_6AG0546410, gene-QOZ80_6BG0499770, gene-QOZ80_8AG0624980
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.6HG0568390.1, HORVU.MOREX.r3.7HG0743900.1
Poaceae	Lolium multiflorum	3	gene-QYE76_021073, gene-QYE76_032200, gene-QYE76_036640
Poaceae	Oryza coarctata	6	Oco03G004210, Oco04G004170, Oco09G006570, Oco10G006810 ... Oco15G005650, Oco16G005430
Poaceae	Oryza sativa	3	LOC_Os02g08530.1, LOC_Os05g25540.1, LOC_Os08g18920.1
Poaceae	Paspalum vaginatum	2	gene-BS78_04G062000, gene-BS78_10G207700
Poaceae	Puccinellia tenuiflora	3	Pt_Chr0202291, Pt_Chr0401555, Pt_Chr0702843
Poaceae	Sporobolus alterniflorus	6	Chr05G008630, Chr06G033840, Chr0G007760, Chr10G019030 ... Chr11G003560, Chr16G012200
Poaceae	Thinopyrum elongatum	2	Tel6E01G304700, Tel7E01G877000
Poaceae	Triticum dicoccoides	4	gene_TRIDC6AG019990, gene_TRIDC6BG026000 ... gene_TRIDC7AG071660, gene_TRIDC7BG066950
Poaceae	Triticum aestivum	6	TraesCS6A02G145700.1, TraesCS6B02G174100.2 ... TraesCS6D02G135000.1, TraesCS7A02G510900.1, TraesCS7B02G421800.1, TraesCS7D02G500300.1
Poaceae	Zea mays	3	Zm00001eb234200_P003, Zm00001eb275120_P001 ... Zm00001eb386750_P004
Poaceae	Zoysia japonica	1	nbis-gene-33578
Poaceae	Zoysia macrostachya	4	Zma_g12316, Zma_g15074, Zma_g22765, Zma_g30897
Portulacaceae	Portulaca oleracea	4	evm.TU.LG05.1542, evm.TU.LG07.1210, evm.TU.LG07.1819 ... evm.TU.LG15.1345
Posidoniaceae	Posidonia oceanica	1	gene.Posoc03g12290
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_10_RagTag.884, evm.TU.Scaffold_18_RagTag.271
Rhizophoraceae	Carallia pectinifolia	3	nbisL1-mrna-13591, nbisL1-mrna-28265, nbisL1-mrna-28304
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-6173, nbisL1-mrna-7481
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-7771, nbisL1-mrna-9137
Rhizophoraceae	Kandelia candel	2	evm.TU.utg000004l.196, evm.TU.utg000023l.240
Rhizophoraceae	Kandelia obovata	2	Maker00004252, Maker00018739
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-14975, nbisL1-mrna-3747
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-17195, nbisL1-mrna-7824
Salicaceae	Populus euphratica	4	populus_peu04077, populus_peu04713, populus_peu12968 ... populus_peu34907
Solanaceae	Lycium barbarum	2	gene-LOC132615074, gene-LOC132633048
Solanaceae	Solanum chilense	2	SOLCI003305600, SOLCI003652000
Solanaceae	Solanum pennellii	2	gene-LOC107013686, gene-LOC107018019
Tamaricaceae	Reaumuria soongarica	2	STRG.32971_chr09_+, gene_10170
Tamaricaceae	Tamarix chinensis	2	TC01G1422, TC02G0604
Zosteraceae	Zostera marina	1	Zosma03g01790.v3.1