Basic Information
Locus ID:
Ag5G00155
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Triphosphate tunel metalloenzyme 3-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 2037026 | 2038072 | + | Ag5G00155 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.61 | 29,670.88 Da | 49.49 | 87.86 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd07374 | CYTH-like_Pase | 59 | 233 | 3.18766E-26 | - |
| Pfam | PF01928 | CYTH domain | 58 | 238 | 4.3E-24 | IPR023577 |
| SUPERFAMILY | SSF55154 | CYTH-like phosphatases | 58 | 243 | 4.74E-24 | IPR033469 |
| Gene3D | G3DSA:2.40.320.10 | - | 57 | 256 | 1.7E-58 | - |
| SMART | SM01118 | CYTH_2 | 57 | 257 | 6.7E-5 | IPR023577 |
| ProSiteProfiles | PS51707 | CYTH domain profile. | 57 | 254 | 13.920463 | IPR023577 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G11890.1 | adenylate cyclases. adenylate cyclase | 0 |
| RefSeq | XP_017218351.1 | PREDICTED: triphosphate tunel metalloenzyme 3-like [Daucus carota subsp. sativus] | 0 |
| Q9SIY3 | Triphosphate tunnel metalloenzyme 3 OS=Arabidopsis thaliana OX=3702 GN=TTM3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A164U5C5 | CYTH domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_025526 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 2.84094 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 4.749701 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 3.04249 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 3.964155 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 6.816794 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 1.84795 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 2.558709 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 1.08268 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 13.22003 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 13.02017 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 14.677207 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 12.041386 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 13.295339 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 14.426349 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 9.907251 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 8.638932 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 13.245478 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 22.411461 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 18.422924 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 13.445739 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 17.018814 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 11.356032 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 8.230385 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 14.028142 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 10.5471 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 17.32847 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 19.115753 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 22.013008 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 15.849751 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 5.818674 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 9.525743 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 12.78597 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 3.493489 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 6.312822 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 4.685159 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 3.939001 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 7.937939 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 4.254282 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 27.397207 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 38.565762 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 20.533056 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 8.786842 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 9.040883 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 7.46373 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 13.034016 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 11.914289 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 10.634156 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 7.276055 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 5.873239 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 5.132556 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg27151, jg3918 |
| Aizoaceae | Mesembryanthemum crystallinum | 3 | gene_26223, gene_8598, gene_8939 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah014233 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_8g193350 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg11613, Sbi_jg25517, Sbi_jg46547, Sbi_jg9349 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg19256, Seu_jg20863 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00011063 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl41893, Sgl46695 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000008794, gene:ENSEOMG00000032172 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0022940, CQ.Regalona.r1.8BG0019400 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30129110, pistato.v30261800 |
| Apiaceae | Apium graveolens | 2 | Ag4G01655, Ag5G00155 |
| Arecaceae | Cocos nucifera | 2 | COCNU_01G010350, COCNU_11G008040 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103706473, gene-LOC103711469 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_01.110.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri5G17591, Ftri7G05040 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G11890.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10002332m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | SpUN0284_0010.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g011180.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq02G0349, Ceq06G1432 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl02G0364, Cgl06G1497 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno02g07530 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0053s00005.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g21370 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-8145 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG01.764, evm.TU.LG07.615 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00001085, Pov_00020198 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb5G29592, Lb6G32020 |
| Poaceae | Echinochloa crus-galli | 7 | AH04.146, AH07.17, BH02.1220, BH04.146, CH04.62, CH05.143 ... |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0122660, gene-QOZ80_2BG0178010 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0651270.1.CDS1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_049950, gene-QYE76_049982, gene-QYE76_049983 |
| Poaceae | Oryza coarctata | 1 | Oco15G005860 |
| Poaceae | Oryza sativa | 1 | LOC_Os08g20400.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G253900 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0207366 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr06G011080, Chr23G017800, Chr26G001860 |
| Poaceae | Thinopyrum elongatum | 26 | Tel1E01G145800, Tel3E01G035300, Tel3E01G466900 ... |
| Poaceae | Triticum dicoccoides | 9 | gene_TRIDC1BG050710, gene_TRIDC3BG004370 ... |
| Poaceae | Triticum aestivum | 12 | TraesCS2D02G367500.1, TraesCS3B02G029200.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb225080_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-55316 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g23857 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG07.1803, evm.TU.LG16.1596, evm.TU.LG26.72 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g17050 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_10_RagTag.93, evm.TU.Scaffold_11_RagTag.675 |
| Rhizophoraceae | Carallia pectinifolia | 5 | nbisL1-mrna-10710, nbisL1-mrna-12912, nbisL1-mrna-12915 ... |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-17187, nbisL1-mrna-21303 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-12287, nbisL1-mrna-16534 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000005l.12, evm.TU.utg000033l.61 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00009097 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-16714, nbisL1-mrna-17121 |
| Rhizophoraceae | Rhizophora mangle | 3 | nbisL1-mrna-14490, nbisL1-mrna-8343, nbisL1-mrna-8344 |
| Salicaceae | Populus euphratica | 3 | populus_peu04259, populus_peu05682, populus_peu35079 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132603101, gene-LOC132621430 |
| Solanaceae | Solanum chilense | 1 | SOLCI004820400 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107021242, gene-LOC107026488 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_10161, gene_9012 |
| Tamaricaceae | Tamarix chinensis | 1 | TC08G2266 |
| Zosteraceae | Zostera marina | 2 | Zosma01g04530.v3.1, Zosma03g33860.v3.1 |