Basic Information
Locus ID:
Ag5G00129
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 1614371 | 1622107 | + | Ag5G00129 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.89 | 68,614.59 Da | 32.33 | 90.64 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04003 | Dip2/Utp12 Family | 468 | 569 | 1.5E-13 | IPR007148 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 30 | 265 | 1.57E-18 | IPR011047 |
| Gene3D | G3DSA:2.130.10.10 | - | 71 | 304 | 2.3E-14 | IPR015943 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 592 | 610 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 580 | 628 | - | - |
| Coils | Coil | Coil | 624 | 628 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G15420.1 | 0 | |
| RefSeq | XP_017219900.1 | PREDICTED: WD repeat-containing protein 43 isoform X1 [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A164U3Z9 | Utp12 domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_025482 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 17.737328 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 8.557414 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 3.403316 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 4.046888 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 5.107924 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 5.968964 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 5.778869 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 7.128999 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 19.135904 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 21.813343 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 23.281357 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 24.654533 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 22.909792 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 19.223978 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 3.136412 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 5.16922 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 10.122598 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 7.886173 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 5.247846 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 9.6156 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 8.958591 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 14.049127 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 15.031936 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 14.827169 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 13.590157 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 8.100236 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 9.21573 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 8.306929 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 11.258961 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 3.365369 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 6.666718 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 7.28286 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 10.577924 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 9.430072 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 9.009815 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 6.592408 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 3.169771 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 4.088989 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 6.160702 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 3.580308 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 1.509452 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 8.993452 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 6.598596 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 27.823503 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 19.794266 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 17.108822 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 13.166184 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 21.694992 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 19.319561 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 20.669458 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg12042, jg23124 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_26185 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah010626 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g220070 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg11530, Sbi_jg46470 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg20779 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00005216 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl55967, Sgl61138 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000018861, gene:ENSEOMG00000037296 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7BG0010300, CQ.Regalona.r1.9AG0014330 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30127730 |
| Apiaceae | Apium graveolens | 1 | Ag5G00129 |
| Arecaceae | Cocos nucifera | 1 | COCNU_03G002820 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103721842 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_08.712.V1.1, AsparagusV1_09.1431.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri9G13876 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G15420.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10008433m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g13790.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB03g006430.2N, BniB03g026290.2N, BniB06g040830.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq01G1524 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl01G1689, Cgl04G0661 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno06g01980 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g07560 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-724 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.2015 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00002853, Pov_00037866 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G12124 |
| Poaceae | Echinochloa crus-galli | 4 | AH02.2532, BH02.2630, BH02.2634, CH02.2866 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0038500, gene-QOZ80_1BG0088400 |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.3HG0275940.1, HORVU.MOREX.r3.3HG0275950.1 ... |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_000188, gene-QYE76_054252 |
| Poaceae | Oryza coarctata | 3 | Oco01G015860, Oco02G016180, Oco24G011020 |
| Poaceae | Oryza sativa | 2 | LOC_Os01g46060.1, LOC_Os12g43830.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_03G222800, gene-BS78_K141000 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0604953, Pt_Chr0704733 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr02G005800, Chr03G019190, Chr05G027560, Chr08G022840 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G024300 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC3AG035150, gene_TRIDC3BG039420 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS3A02G234700.1, TraesCS3B02G265100.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb294740_P002 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-11532, nbis-gene-31495 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g11455, Zma_g8920 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG07.1752, evm.TU.LG15.1435 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g24950 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_10_RagTag.1210 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-6851, nbisL1-mrna-6914 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-5926 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-17025 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000004l.353 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00004254 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-16351 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-18060 |
| Salicaceae | Populus euphratica | 2 | populus_peu02846, populus_peu33739 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132632970 |
| Solanaceae | Solanum chilense | 1 | SOLCI004631800 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107015324 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_10127 |
| Tamaricaceae | Tamarix chinensis | 1 | TC08G2160 |
| Zosteraceae | Zostera marina | 1 | Zosma06g10740.v3.1 |