Basic Information
Locus ID:
Ag5G00128
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Periodic tryptophan protein 2
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 1608186 | 1613374 | + | Ag5G00128 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.00 | 98,356.79 Da | 39.28 | 87.67 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 325 | 630 | 3.71524E-56 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 546 | 574 | 0.064 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 373 | 403 | 1.3E-7 | IPR001680 |
| Pfam | PF04003 | Dip2/Utp12 Family | 777 | 882 | 1.6E-28 | IPR007148 |
| Pfam | PF00400 | WD domain, G-beta repeat | 495 | 532 | 9.0E-9 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 410 | 446 | 3.9E-5 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 22 | 330 | 2.66E-24 | IPR036322 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 293 | 655 | 2.67E-63 | IPR011047 |
| Gene3D | G3DSA:2.130.10.10 | - | 11 | 236 | 1.1E-20 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 485 | 668 | 7.4E-35 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 287 | 484 | 6.6E-37 | IPR015943 |
| SMART | SM00320 | WD40_4 | 40 | 80 | 64.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 407 | 446 | 8.2E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 597 | 636 | 0.77 | IPR001680 |
| SMART | SM00320 | WD40_4 | 130 | 169 | 0.019 | IPR001680 |
| SMART | SM00320 | WD40_4 | 449 | 490 | 130.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 322 | 362 | 43.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 83 | 120 | 2.4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 365 | 404 | 3.1E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 493 | 532 | 1.9E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 536 | 574 | 2.3E-5 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 500 | 533 | 12.973764 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 414 | 455 | 14.585471 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 542 | 574 | 10.809215 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 414 | 447 | 11.998316 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 500 | 541 | 16.022453 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 372 | 408 | 11.971952 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 372 | 413 | 14.652308 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 542 | 574 | 9.071966 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 519 | 533 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 433 | 447 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 519 | 533 | 3.2E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 433 | 447 | 3.2E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 391 | 405 | 3.2E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 229 | 262 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 246 | 262 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G15440.1 | periodic tryptophan protein 2. | 0 |
| RefSeq | XP_009771368.1 | PREDICTED: periodic tryptophan protein 2 homolog [Nicotiana sylvestris] | 0 |
| Q8VYZ5 | Periodic tryptophan protein 2 OS=Arabidopsis thaliana OX=3702 GN=PWP2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5B7C0R6 | Utp12 domain-containing protein OS=Davidia involucrata OX=16924 GN=Din_043896 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 11.14075 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 9.415149 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 7.713021 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 10.126645 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 9.839774 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 10.602712 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 8.642294 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 9.372635 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 24.237091 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 27.711903 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 27.864479 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 30.971594 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 28.565193 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 22.864828 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 2.644938 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 5.273559 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 6.253392 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 6.020137 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 4.937349 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 7.841685 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 8.014777 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 7.266139 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 7.706344 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 8.282969 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 9.333232 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 10.107208 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 7.028839 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 6.346751 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 8.586966 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 4.637361 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 7.376208 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 6.867956 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 10.430631 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 7.663406 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 8.092832 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 4.941883 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 3.355142 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 3.148555 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 4.84007 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 3.303598 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 1.234925 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 7.69011 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 4.891572 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 19.880865 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 10.763118 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 12.774995 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 9.651958 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 12.435946 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 8.871939 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 9.583713 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg18220 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_26184 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah010627 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g220060 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg11529, Sbi_jg46467 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg20778 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00005218, GOSA_00005219 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl55968, Sgl61139 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000018899, gene:ENSEOMG00000036144 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7BG0010310, CQ.Regalona.r1.9AG0014320 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30127660, pistato.v30128740 |
| Apiaceae | Apium graveolens | 1 | Ag5G00128 |
| Arecaceae | Cocos nucifera | 2 | COCNU_06G004220, COCNU_14G002730 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103717859 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.3011.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri9G32814 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G15440.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10006752m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g13810.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB03g006450.2N, BniB06g040850.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G0274 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G0289 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno06g03270 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0148s00017.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g25070 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-6450 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.439 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00001276, Pov_00030923 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G18322 |
| Poaceae | Echinochloa crus-galli | 4 | AH05.1700, BH05.1849, CH03.1656, CH05.1946 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_1AG0043400 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0086720.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_015952 |
| Poaceae | Oryza coarctata | 2 | Oco09G014450, Oco10G014420 |
| Poaceae | Oryza sativa | 1 | LOC_Os05g44320.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_09G205900 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0504045, Pt_Chr0504133 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr01G016830, Chr12G019980, Chr18G014120, Chr22G003380 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G561200 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG050250, gene_TRIDC1BG057060 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G340000.1, TraesCS1B02G352300.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb293800_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-25110 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g28620 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG01.1553, evm.TU.LG18.1258, evm.TU.LG20.626 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g22400 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_10_RagTag.1212 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-6853, nbisL1-mrna-6916 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-5925 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-17024 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000004l.355 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00004036 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-16353, nbisL1-mrna-19659 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-18058 |
| Salicaceae | Populus euphratica | 3 | populus_peu02844, populus_peu33735, populus_peu33736 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132633331 |
| Solanaceae | Solanum chilense | 1 | SOLCI003331300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107012095 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_10126 |
| Tamaricaceae | Tamarix chinensis | 1 | TC08G2159 |
| Zosteraceae | Zostera marina | 1 | Zosma06g00730.v3.1 |