Basic Information
Locus ID:
Ag5G00100
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
F-Box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 1216337 | 1218773 | - | Ag5G00100 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.96 | 28,884.95 Da | 58.38 | 83.73 | -0.07 |
Protein Domain:
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G39250.1 | F-box family protein. | 0 |
| RefSeq | XP_017216444.1 | PREDICTED: F-box protein At5g39250 [Daucus carota subsp. sativus] | 0 |
| Q9FL82 | F-box protein At5g39250 OS=Arabidopsis thaliana OX=3702 GN=At5g39250 PE=2 SV=1 | 0 | |
| TrEMBL | A0A161Y7G0 | F-box domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_025424 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 8.599473 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 6.016585 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 4.455279 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 5.631969 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 4.706446 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 3.752878 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 7.1218 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 6.198581 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 10.414908 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 8.479602 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 11.817247 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 10.263904 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 10.04847 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 8.32183 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 9.71716 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 8.334874 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 6.24193 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 9.664325 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 9.43652 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 14.420048 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 14.480939 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 6.978155 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 7.954663 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 9.032853 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 9.480107 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 6.27371 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 7.632335 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 5.467458 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 7.727248 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 6.124358 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 3.617007 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 4.177581 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 27.780544 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 19.363836 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 24.046597 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 30.096188 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 11.758526 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 18.84973 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 5.938349 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 12.664115 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 5.938406 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 26.446638 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 19.453087 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 17.059647 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 9.790301 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 23.580133 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 14.345542 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 10.779424 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 15.123691 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 12.377595 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg40206 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah037913 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g205280 |
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg2619 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg24274 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00015879 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl78485, Sgl78510, Sgl80981 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000019844, gene:ENSEOMG00000038929 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.9AG0004440 |
| Apiaceae | Apium graveolens | 1 | Ag5G00100 |
| Arecaceae | Cocos nucifera | 1 | COCNU_08G009820 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103716730, gene-LOC103722378 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_03.2715.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri13G16713, Ftri18G16478 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G39250.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10027896m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g02740.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB01g028410.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G0399 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G0350 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g13490 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-7287 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.281 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00023650 |
| Poaceae | Echinochloa crus-galli | 3 | BH01.3662, CH01.3845, CH06.2203 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_3AG0228560 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0173720.1.CDS1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_007751, gene-QYE76_066265 |
| Poaceae | Oryza coarctata | 1 | Oco06G016830 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g30920.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G320600 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr01G023850, Chr04G013580, Chr07G013000 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G571900 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC2BG050370 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G336200.1.cds1, TraesCS2B02G345700.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb020180_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-47218 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g3474 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG05.1244, evm.TU.LG25.69 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_3_RagTag.1717 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-2029, nbisL1-mrna-2171 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-10587 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-2909 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000019l.83 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-21597 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-18226 |
| Salicaceae | Populus euphratica | 2 | populus_peu09352, populus_peu25179 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132622180 |
| Solanaceae | Solanum chilense | 1 | SOLCI005079400 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107009710 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_7670 |
| Tamaricaceae | Tamarix chinensis | 1 | TC12G0336 |
| Zosteraceae | Zostera marina | 1 | Zosma05g05700.v3.1 |