Basic Information
Locus ID:
Ag5G00099
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Sister chromatid cohesion protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 1190057 | 1208900 | - | Ag5G00099 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.61 | 158,705.52 Da | 49.38 | 97.78 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12830 | Sister chromatid cohesion C-terminus | 1021 | 1180 | 6.0E-39 | IPR024986 |
| SUPERFAMILY | SSF48371 | ARM repeat | 365 | 1104 | 8.32E-19 | IPR016024 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 141 | 179 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 340 | 362 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1365 | 1426 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 141 | 159 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 160 | 176 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G15540.1 | PHD finger family protein. Encodes Adherin SCC2. Essential for viability. Required for normal seed development. Plays a role in the establishment of sister-chromatid cohesion and chromosome organization during meiosis. | 0 |
| RefSeq | XP_017218529.1 | PREDICTED: nipped-B-like protein [Daucus carota subsp. sativus] | 0 |
| A5HEI1 | Sister chromatid cohesion protein SCC2 OS=Arabidopsis thaliana OX=3702 GN=SCC2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A164U2C9 | Sister chromatid cohesion protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_025422 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 16.034166 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 14.979242 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 16.679482 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 15.077594 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 16.716137 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 21.326946 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 17.347485 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 14.649038 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 23.453142 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 24.681644 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 24.691313 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 25.489752 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 24.098969 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 18.608351 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 4.824437 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 5.289573 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 6.434046 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 9.542834 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 6.712394 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 9.794332 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 11.841275 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 8.231021 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 8.981001 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 8.001905 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 9.027764 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 11.822854 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 8.50468 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 9.665118 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 11.549669 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 2.391397 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 4.935503 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 2.917448 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 11.967801 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 7.763581 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 11.161532 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 5.535861 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 2.298636 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 3.000032 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 14.408401 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 9.372213 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 6.657413 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 9.770696 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 12.529481 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 25.274364 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 19.08942 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 9.886081 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 20.012213 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 11.378882 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 10.371151 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 9.557673 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg17598 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_17368 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah032989 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg29679, Sbi_jg43201 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg18692 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00004445, GOSA_00004446 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl66502, Sgl66504, Sgl70833, Sgl70835 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000015478, gene:ENSEOMG00000019779 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.2AG0007340, CQ.Regalona.r1.2BG0008580 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30193290, pistato.v30193610 |
| Apiaceae | Apium graveolens | 1 | Ag5G00099 |
| Arecaceae | Cocos nucifera | 2 | COCNU_06G016210, COCNU_14G011040 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103704462 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_03.2056.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri13G22167 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G15540.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10012417m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g28560.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g047370.2N, BniB05g023210.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G0398 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G0349 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno01g02230 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0594s00003.v1.0, Dusal.4436s00001.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g39530 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.280 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00028041 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G01388 |
| Poaceae | Echinochloa crus-galli | 3 | AH03.62, BH03.68, CH03.86 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_7AG0552040, gene-QOZ80_7BG0583020 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0157090.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_043148 |
| Poaceae | Oryza coarctata | 2 | Oco13G000450, Oco14G000410 |
| Poaceae | Oryza sativa | 1 | LOC_Os07g01940.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G006600 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0303326 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr24G002420, Chr28G000370 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G479500 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG036880, gene_TRIDC2BG040920 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G260400.1, TraesCS2B02G281600.2 ... |
| Poaceae | Zea mays | 4 | Zm00001eb026760_P001, Zm00001eb118180_P002 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-52680 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g4669 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG05.1247, evm.TU.LG25.73 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g04320 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_3_RagTag.1719 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-2173, nbisL1-mrna-2176 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-10585 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-2911 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000019l.194 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00002122 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-12171 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-18228 |
| Salicaceae | Populus euphratica | 2 | populus_peu09354, populus_peu25177 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132618092 |
| Solanaceae | Solanum chilense | 1 | SOLCI005742200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107014471 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_9539 |
| Tamaricaceae | Tamarix chinensis | 2 | TC12G0332, TC12G0333 |
| Zosteraceae | Zostera marina | 1 | Zosma06g23430.v3.1 |