halophFGD

Basic Information

Locus ID: Ag5G00084

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: RING-type zinc-finger

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr5	1052993	1055828	+	Ag5G00084

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.21	28,800.01 Da	50.05	104.74	0.15

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF13445	RING-type zinc-finger	46	86	3.3E-8	IPR027370
SUPERFAMILY	SSF57850	RING/U-box	40	104	1.35E-10	-
Gene3D	G3DSA:3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	35	136	6.9E-12	IPR013083
ProSiteProfiles	PS50089	Zinc finger RING-type profile.	46	101	10.246822	IPR001841
ProSitePatterns	PS00518	Zinc finger RING-type signature.	65	74	-	IPR017907

Best hit

Source	Best Hit ID	Description
TAIR	AT3G29270.1	RING/U-box superfamily protein.
RefSeq	XP_017215295.1	PREDICTED: uncharacterized protein LOC108193229 [Daucus carota subsp. sativus]
TrEMBL	A0A6L5B781	RING-type domain-containing protein OS=Apium graveolens OX=4045 GN=AG4045_000788 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	8.526204	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	6.170657	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	5.608363	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	7.178701	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	6.862967	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	8.685934	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	7.085328	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	4.811416	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	8.628969	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	8.70656	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	11.967536	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	15.93799	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	12.305809	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	10.210231	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	9.662471	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	9.38903	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	10.915886	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	14.063269	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	8.376831	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	13.587175	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	14.802359	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	18.172821	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	14.628791	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	13.288711	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	14.919999	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	12.082903	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	13.868213	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	14.39365	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	13.406917	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	9.858758		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	10.33555		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	9.31097		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	27.555122		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	16.261429		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	24.834225		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	22.094309		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	19.530926		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	20.76366		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	9.629192	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	7.098078	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	5.815246	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	23.578602	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	31.78714	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	61.346943	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	51.365231	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	21.540094	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	37.792904	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	7.563589	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	7.395023	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	7.718594	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	6	jg17615, jg19769, jg34808, jg40219, jg5382, jg7138
Aizoaceae	Mesembryanthemum crystallinum	2	gene_18283, gene_19668
Amaranthaceae	Atriplex hortensis	2	Ah000776, Ah026493
Amaranthaceae	Beta vulgaris	2	BVRB_5g114010, BVRB_6g137000
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg13326, Sbi_jg31063, Sbi_jg52514, Sbi_jg58221
Amaranthaceae	Salicornia europaea	2	Seu_jg25827, Seu_jg9324
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00004682, GOSA_00013345
Amaranthaceae	Suaeda glauca	4	Sgl34451, Sgl39863, Sgl54753, Sgl60056
Amaranthaceae	Chenopodium album	5	gene:ENSEOMG00000001204, gene:ENSEOMG00000005309 ... gene:ENSEOMG00000022132, gene:ENSEOMG00000025895, gene:ENSEOMG00000026361
Amaranthaceae	Chenopodium quinoa	3	CQ.Regalona.r1.5AG0019900, CQ.Regalona.r1.5BG0021310 ... CQ.Regalona.r1.6AG0017370
Anacardiaceae	Pistacia vera	1	pistato.v30144610
Apiaceae	Apium graveolens	4	Ag4G00385, Ag5G00084, Ag5G02778, AgUnG01546
Arecaceae	Cocos nucifera	4	COCNU_05G002130, COCNU_06G016750, COCNU_13G005930 ... COCNU_14G010920
Arecaceae	Phoenix dactylifera	3	gene-LOC103697689, gene-LOC103709269, gene-LOC103718167
Asparagaceae	Asparagus officinalis	2	AsparagusV1_07.3014.V1.1, AsparagusV1_08.1405.V1.1
Asteraceae	Flaveria trinervia	4	Ftri16G02412, Ftri18G07026, Ftri2G12088, Ftri6G15673
Brassicaceae	Arabidopsis thaliana	3	AT1G69330.1, AT1G74370.1, AT3G29270.1
Brassicaceae	Eutrema salsugineum	3	Thhalv10005526m.g.v1.0, Thhalv10019012m.g.v1.0 ... Thhalv10019026m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp2g17850.v2.2, Sp5g24390.v2.2, Sp5g29530.v2.2
Brassicaceae	Brassica nigra	10	BniB01g041060.2N, BniB02g006870.2N, BniB02g045970.2N ... BniB02g068730.2N, BniB03g035780.2N, BniB03g046710.2N, BniB03g052860.2N, BniB04g006560.2N, BniB06g039030.2N, BniB06g047930.2N
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno09g05470, gene.Cymno11g05300
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate08g14730
Nitrariaceae	Nitraria sibirica	5	evm.TU.LG02.254, evm.TU.LG03.344, evm.TU.LG10.600 ... evm.TU.LG10.601, evm.TU.LG10.609
Plantaginaceae	Plantago ovata	2	Pov_00002333, Pov_00028025
Plumbaginaceae	Limonium bicolor	1	Lb1G04962
Poaceae	Eleusine coracana subsp. coracana	4	gene-QOZ80_3AG0228550, gene-QOZ80_3AG0238420 ... gene-QOZ80_3BG0274780, gene-QOZ80_3BG0289630
Poaceae	Hordeum vulgare	1	HORVU.MOREX.r3.4HG0397580.1.CDS1
Poaceae	Lolium multiflorum	3	gene-QYE76_066291, gene-QYE76_069825, gene-QYE76_069973
Poaceae	Oryza coarctata	3	Oco05G006220, Oco05G016370, Oco06G006380
Poaceae	Oryza sativa	2	LOC_Os03g11260.1, LOC_Os03g31320.2
Poaceae	Paspalum vaginatum	2	gene-BS78_01G319300, gene-BS78_01G439400
Poaceae	Sporobolus alterniflorus	4	Chr01G027350, Chr04G001490, Chr07G009780, Chr12G012020
Poaceae	Thinopyrum elongatum	1	Tel4E01G426800
Poaceae	Triticum dicoccoides	2	gene_TRIDC4AG007340, gene_TRIDC4BG043720
Poaceae	Triticum aestivum	3	TraesCS4A02G053400.1.cds1, TraesCS4B02G251200.1.cds1 ... TraesCS4D02G251200.1.cds1
Poaceae	Zea mays	3	Zm00001eb020360_P001, Zm00001eb393270_P001 ... Zm00001eb400420_P001
Poaceae	Zoysia japonica	2	nbis-gene-2513, nbis-gene-47216
Poaceae	Zoysia macrostachya	2	Zma_g1807, Zma_g4169
Portulacaceae	Portulaca oleracea	4	evm.TU.LG09.1293, evm.TU.LG12.1504, evm.TU.LG13.455 ... evm.TU.LG21.154
Posidoniaceae	Posidonia oceanica	1	gene.Posoc04g11440
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.Scaffold_17_RagTag.407, evm.TU.Scaffold_3_RagTag.1736 ... evm.TU.Scaffold_4_RagTag.610
Rhizophoraceae	Carallia pectinifolia	4	nbisL1-mrna-14521, nbisL1-mrna-15186, nbisL1-mrna-22910 ... nbisL1-mrna-28753
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-10572, nbisL1-mrna-18943
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-14938, nbisL1-mrna-1744, nbisL1-mrna-2925
Rhizophoraceae	Kandelia candel	3	add.evm.TU.utg000013l.91, add.evm.TU.utg000019l.76 ... evm.TU.utg000008l.389
Rhizophoraceae	Kandelia obovata	2	Maker00002297, Maker00006447
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-19592, nbisL1-mrna-21589, nbisL1-mrna-22605
Rhizophoraceae	Rhizophora mangle	4	nbisL1-mrna-14945, nbisL1-mrna-1582, nbisL1-mrna-18242 ... nbisL1-mrna-23502
Salicaceae	Populus euphratica	6	populus_peu00633, populus_peu09128, populus_peu20681 ... populus_peu24580, populus_peu29921, populus_peu29939
Solanaceae	Lycium barbarum	3	gene-LOC132625114, gene-LOC132629299, gene-LOC132641992
Solanaceae	Solanum chilense	3	SOLCI001707100, SOLCI004681400, SOLCI007454300
Solanaceae	Solanum pennellii	3	gene-LOC107009608, gene-LOC107009707, gene-LOC107018452
Tamaricaceae	Reaumuria soongarica	3	STRG.22725_chr05_+, STRG.83_chr01_+, gene_255
Tamaricaceae	Tamarix chinensis	3	TC01G1201, TC01G3003, TC03G0834
Zosteraceae	Zostera marina	1	Zosma06g09980.v3.1