halophFGD

Basic Information

Locus ID: Ag5G00079

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Short Name: APC11

Description: complex subunit 11

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr5	1007572	1011108	-	Ag5G00079

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.02	9,262.55 Da	45.01	50.12	-0.35

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd16456	RING-H2_APC11	16	78	2.18999E-36	IPR024991
Pfam	PF12861	Anaphase-promoting complex subunit 11 RING-H2 finger	2	80	3.7E-39	IPR024991
SUPERFAMILY	SSF57850	RING/U-box	3	79	4.24E-31	-
Gene3D	G3DSA:3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	1	80	1.5E-27	IPR013083
ProSiteProfiles	PS50089	Zinc finger RING-type profile.	30	73	11.117249	IPR001841

Gene Ontology

Biological Process:

GO:0031145 (anaphase-promoting complex-dependent catabolic process)

Molecular Function:

GO:0008270 (zinc ion binding) GO:0061630 (ubiquitin protein ligase activity) GO:0097602 (cullin family protein binding)

Cellular Component:

GO:0005680 (anaphase-promoting complex)

KEGG Pathway

KO Term:

K03358 (anaphase-promoting complex subunit 11)

Pathway:

ko04110 (Cell cycle) map04110 (Cell cycle) ko04111 (Cell cycle - yeast) map04111 (Cell cycle - yeast) ko04113 (Meiosis - yeast) map04113 (Meiosis - yeast) ko04114 (Oocyte meiosis) map04114 (Oocyte meiosis) ko04120 (Ubiquitin mediated proteolysis) map04120 (Ubiquitin mediated proteolysis)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G05870.7	-
RefSeq	NP_001325496.1	anaphase-promoting complex/cyclosome 11, partial [Arabidopsis thaliana]
Swiss-Prot	Q9M9L0	Anaphase-promoting complex subunit 11 OS=Arabidopsis thaliana OX=3702 GN=APC11 PE=1 SV=3
TrEMBL	A0A6N2N9C1	Anaphase-promoting complex subunit 11 OS=Salix viminalis OX=40686 GN=SVIM_LOCUS474148 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	30.806948	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	18.864737	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	15.915242	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	20.376711	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	19.412142	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	18.103016	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	15.244838	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	19.281509	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	14.156941	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	16.241365	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	19.077082	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	25.130054	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	19.725454	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	25.184448	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	17.029537	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	15.102035	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	20.926186	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	23.588852	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	18.240307	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	18.717617	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	21.498848	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	36.426605	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	29.953468	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	31.512648	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	29.153332	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	22.257429	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	22.918295	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	26.1765	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	26.133507	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	7.631567		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	7.079514		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	5.886935		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	14.472002		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	40.633762		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	17.718922		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	34.233353		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	21.711954		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	31.626755		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	18.980648	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	10.772939	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	10.50713	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	14.264534	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	10.214613	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	28.11388	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	22.207682	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	17.995043	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	23.623783	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	82.365303	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	82.87011	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	83.768333	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Aizoaceae	Mesembryanthemum crystallinum	1	gene_11852
Amaranthaceae	Atriplex hortensis	1	Ah005391
Amaranthaceae	Beta vulgaris	1	BVRB_4g079360
Amaranthaceae	Salicornia bigelovii	1	Sbi_jg43063
Amaranthaceae	Salicornia europaea	1	Seu_jg11505
Amaranthaceae	Suaeda glauca	2	Sgl24060, Sgl29242
Amaranthaceae	Chenopodium quinoa	3	CQ.Regalona.r1.4AG0005160, CQ.Regalona.r1.4AG0010620 ... CQ.Regalona.r1.4BG0005120
Anacardiaceae	Pistacia vera	1	pistato.v30195120
Apiaceae	Apium graveolens	1	Ag5G00079
Arecaceae	Cocos nucifera	1	contig69567357G000010
Arecaceae	Phoenix dactylifera	1	gene-LOC103720289
Asparagaceae	Asparagus officinalis	2	AsparagusV1_05.144.V1.1, AsparagusV1_07.2301.V1.1
Asteraceae	Flaveria trinervia	1	Ftri12G31473
Brassicaceae	Arabidopsis thaliana	2	AT3G05870.1, AT5G26640.1
Brassicaceae	Eutrema salsugineum	1	Thhalv10005548m.g.v1.0
Brassicaceae	Schrenkiella parvula	1	Sp3g04760.v2.2
Brassicaceae	Brassica nigra	3	BniB02g078700.2N, BniB04g004510.2N, BniB07g032680.2N
Casuarinaceae	Casuarina equisetifolia	1	Ceq05G0019
Casuarinaceae	Casuarina glauca	2	Cgl05G0020, Cgl06G1153
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno17g01430, gene.Cymno17g01510
Dunaliellaceae	Dunaliella salina	1	Dusal.0342s00010.v1.0
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate01g07280
Plantaginaceae	Plantago ovata	2	Pov_00001783, Pov_00040386
Plumbaginaceae	Limonium bicolor	1	Lb3G17986
Poaceae	Echinochloa crus-galli	1	CH01.4538
Poaceae	Eleusine coracana subsp. coracana	4	gene-QOZ80_1AG0031840, gene-QOZ80_1BG0082060 ... gene-QOZ80_3AG0245150, gene-QOZ80_3BG0282900
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.4HG0383160.1.CDS1 ... HORVU.MOREX.r3.5HG0525970.1.CDS1
Poaceae	Lolium multiflorum	2	gene-QYE76_000504, gene-QYE76_068548
Poaceae	Oryza coarctata	2	Oco05G011290, Oco06G011530
Poaceae	Oryza sativa	2	LOC_Os03g19059.1, LOC_Os07g22840.1
Poaceae	Paspalum vaginatum	2	gene-BS78_01G381900, gene-BS78_03G117800
Poaceae	Puccinellia tenuiflora	1	Pt_Chr0500111
Poaceae	Sporobolus alterniflorus	4	Chr01G032610, Chr04G014200, Chr07G002370, Chr12G006930
Poaceae	Thinopyrum elongatum	2	Tel4E01G018900, Tel4E01G334500
Poaceae	Triticum dicoccoides	4	gene_TRIDC4AG016320, gene_TRIDC4BG032630 ... gene_TRIDC5AG068100, gene_TRIDC5BG073350
Poaceae	Triticum aestivum	5	TraesCS4A02G118100.1.cds1, TraesCS4D02G187600.1.cds1 ... TraesCS5A02G476600.1.cds1, TraesCS5B02G489500.1.cds1, TraesCS5D02G489900.1.cds1
Poaceae	Zoysia japonica	2	nbis-gene-3552, nbis-gene-57012
Portulacaceae	Portulaca oleracea	2	evm.TU.LG08.1245, evm.TU.LG22.152
Posidoniaceae	Posidonia oceanica	1	gene.Posoc10g11130
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-11005, nbisL1-mrna-21330
Rhizophoraceae	Kandelia obovata	2	Maker00009211, Maker00013934
Rhizophoraceae	Rhizophora apiculata	1	nbisL1-mrna-10383
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-15444, nbisL1-mrna-4735
Salicaceae	Populus euphratica	1	populus_peu24079
Solanaceae	Lycium barbarum	2	gene-LOC132598521, gene-LOC132615929
Solanaceae	Solanum pennellii	1	gene-LOC107008147
Tamaricaceae	Reaumuria soongarica	1	gene_519
Zosteraceae	Zostera marina	2	Zosma05g21550.v3.1, Zosma05g28110.v3.1