halophFGD

Basic Information

Locus ID: Ag5G00077

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: WRKY transcription factor

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr5	986633	995368	-	Ag5G00077

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.55	114,302.43 Da	44.08	73.05	-0.38

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF12819	Malectin-like domain	389	767	2.0E-39	IPR024788
Pfam	PF03106	WRKY DNA -binding domain	298	355	3.1E-24	IPR003657
Pfam	PF03106	WRKY DNA -binding domain	149	204	4.9E-23	IPR003657
SUPERFAMILY	SSF118290	WRKY DNA-binding domain	289	357	1.15E-27	IPR036576
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	835	884	9.34E-5	IPR011009
SUPERFAMILY	SSF118290	WRKY DNA-binding domain	143	206	1.1E-24	IPR036576
Gene3D	G3DSA:2.60.120.430	-	582	767	4.6E-31	-
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	877	962	1.1E-9	-
Gene3D	G3DSA:2.20.25.80	WRKY domain	134	207	4.7E-26	IPR036576
Gene3D	G3DSA:2.60.120.430	-	386	547	1.1E-22	-
Gene3D	G3DSA:2.20.25.80	WRKY domain	284	350	1.9E-33	IPR036576
SMART	SM00774	WRKY_cls	147	205	8.1E-34	IPR003657
SMART	SM00774	WRKY_cls	297	356	4.5E-37	IPR003657
ProSiteProfiles	PS50811	WRKY domain profile.	292	357	36.070087	IPR003657
ProSiteProfiles	PS50811	WRKY domain profile.	142	206	22.343117	IPR003657
MobiDBLite	mobidb-lite	consensus disorder prediction	199	219	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	359	376	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	350	376	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1	23	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	204	219	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	76	100	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	81	95	-	-

Gene Ontology

Biological Process:

GO:0006355 (regulation of DNA-templated transcription)

Molecular Function:

GO:0003700 (DNA-binding transcription factor activity) GO:0043565 (sequence-specific DNA binding)

Best hit

Source	Best Hit ID	Description
TAIR	AT5G39000.1	Malectin/receptor-like protein kinase family protein.
RefSeq	XP_017216696.1	PREDICTED: receptor-like protein kinase FERONIA [Daucus carota subsp. sativus]
Swiss-Prot	Q9FID8	Putative receptor-like protein kinase At5g39000 OS=Arabidopsis thaliana OX=3702 GN=At5g39000 PE=3 SV=1
TrEMBL	A0A164U1U5	Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_025396 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	2.425966	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	3.450215	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	3.84539	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	5.104872	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	4.435242	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	6.807907	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	5.003556	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	3.508519	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	12.542339	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	14.630752	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	14.629992	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	9.578611	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	11.254367	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	9.743248	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	15.476219	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	15.326283	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	10.815454	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	20.847891	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	21.25009	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	18.530556	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	17.576202	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	8.580058	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	7.685579	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	6.874568	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	11.680273	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	13.714908	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	14.409545	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	12.393927	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	11.926177	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	6.016127		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	8.409547		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	5.646772		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	48.876251		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	16.949364		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	51.684479		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	24.687304		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	16.448189		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	16.607065		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	15.977023	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	21.012438	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	14.975533	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	6.617851	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	15.593509	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	26.069361	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	22.137276	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	7.340647	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	20.818216	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	7.095775	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	6.44884	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	6.187706	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Apiaceae	Apium graveolens	6	Ag2G00947, Ag2G00948, Ag5G00007, Ag5G00076, Ag5G00077 ... Ag5G00096