Basic Information
Locus ID:
Ag5G00028
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
CDP-diacylglycerol-inositol 3-phosphatidyltransferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 544012 | 548635 | + | Ag5G00028 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.80 | 25,113.49 Da | 36.18 | 113.91 | 0.60 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01066 | CDP-alcohol phosphatidyltransferase | 11 | 73 | 1.4E-15 | IPR000462 |
| Gene3D | G3DSA:1.20.120.1760 | - | 1 | 169 | 1.8E-22 | IPR043130 |
| PIRSF | PIRSF000848 | CDP_diag_ino_3_P | 1 | 220 | 2.3E-84 | IPR014387 |
| ProSitePatterns | PS00379 | CDP-alcohol phosphatidyltransferases signature. | 51 | 73 | - | IPR000462 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
ko00562 (Inositol phosphate metabolism)
map00562 (Inositol phosphate metabolism)
ko00564 (Glycerophospholipid metabolism)
map00564 (Glycerophospholipid metabolism)
ko01100 (Metabolic pathways)
map01100 (Metabolic pathways)
ko04070 (Phosphatidylinositol signaling system)
map04070 (Phosphatidylinositol signaling system)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G38570.1 | probable CDP-diacylglycerol--inositol 3-phosphatidyltransferase 2. | 0 |
| RefSeq | XP_017215686.1 | PREDICTED: probable CDP-diacylglycerol--inositol 3-phosphatidyltransferase 2 [Daucus carota subsp. sativus] | 0 |
| Q8GUK6 | Probable CDP-diacylglycerol--inositol 3-phosphatidyltransferase 2 OS=Arabidopsis thaliana OX=3702 GN=PIS2 PE=2 SV=2 | 0 | |
| TrEMBL | A0A164U0B1 | CDP-diacylglycerol--inositol 3-phosphatidyltransferase OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_025322 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 11.94922 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 9.685728 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 12.120895 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 10.908264 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 12.701495 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 13.588645 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 10.658059 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 10.210914 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 28.920143 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 28.466829 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 34.137527 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 29.489264 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 27.968517 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 24.446741 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 34.167984 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 23.236414 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 39.936481 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 24.732496 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 24.489258 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 23.950739 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 26.725698 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 38.812477 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 38.905624 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 40.07085 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 32.706627 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 26.445097 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 28.630617 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 25.430843 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 28.077488 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 11.058985 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 13.167744 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 12.039805 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 14.612287 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 20.40213 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 11.215305 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 14.298369 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 11.069166 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 10.010536 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 18.496317 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 10.878067 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 9.592048 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 34.597874 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 31.992828 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 26.731846 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 32.069786 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 42.376816 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 34.756195 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 33.061466 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 33.661419 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 30.889734 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg26134, jg3022, jg30369, jg30370 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_10664, gene_26690 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah030801 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g214000 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg12237, Sbi_jg47204 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg21477 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00020447, GOSA_00023586 |
| Amaranthaceae | Suaeda glauca | 8 | Sgl40328, Sgl44713, Sgl49476, Sgl55464, Sgl56106, Sgl61439 ... |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000007989, gene:ENSEOMG00000034535 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7AG0019290, CQ.Regalona.r1.7BG0021910 |
| Apiaceae | Apium graveolens | 5 | Ag10G00145, Ag5G00028, Ag6G00675, Ag6G00677, Ag6G01973 |
| Arecaceae | Cocos nucifera | 1 | COCNU_03G012610 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103710283, gene-LOC103710868 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_03.2394.V1.1, AsparagusV1_08.1440.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri4G30633, Ftri8G19658 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G68000.1, AT4G38570.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10019092m.g.v1.0, Thhalv10026160m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp5g23020.v2.2, Sp7g37200.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB03g015730.2N, BniB03g042220.2N, BniB03g045360.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq07G1713 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl07G1858 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno11g08660 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0370s00004.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g05290 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG08.320 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00001666 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb1G06765, Lb1G06767, Lb6G29872 |
| Poaceae | Echinochloa crus-galli | 3 | BH06.2426, BH09.909, CH09.1011 |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_4BG0350740, gene-QOZ80_6AG0547720 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0197690.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_046401 |
| Poaceae | Oryza coarctata | 3 | Oco03G001320, Oco04G001210, Oco09G006750 |
| Poaceae | Oryza sativa | 2 | LOC_Os02g03110.2, LOC_Os06g29650.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_06G077100, gene-BS78_08G147900 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0307438 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr02G031600, Chr05G009460, Chr10G019960, Chr11G002700 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G791500 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC2BG071620 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G469200.1, TraesCS2B02G492100.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb274200_P001, Zm00001eb389940_P002 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-44822, nbis-gene-7811 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g19608, Zma_g21188 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG10.318, evm.TU.LG17.314 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc07g03740 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_7_RagTag.235 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-19482 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-18399, nbisL1-mrna-511 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-7053 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000028l.141 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00010771 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-8104 |
| Salicaceae | Populus euphratica | 2 | populus_peu08696, populus_peu36655 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132609570 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107027011 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.5462_chr04_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC04G2195 |
| Zosteraceae | Zostera marina | 1 | Zosma03g35700.v3.1 |