Basic Information
Locus ID:
Ag5G00013
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Kelch motif
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 365962 | 367782 | + | Ag5G00013 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.75 | 41,471.47 Da | 40.32 | 87.93 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01344 | Kelch motif | 154 | 197 | 2.1E-9 | IPR006652 |
| Pfam | PF01344 | Kelch motif | 108 | 149 | 1.7E-10 | IPR006652 |
| SUPERFAMILY | SSF117281 | Kelch motif | 77 | 326 | 1.09E-44 | IPR015915 |
| SUPERFAMILY | SSF81383 | F-box domain | 6 | 86 | 1.06E-6 | IPR036047 |
| Gene3D | G3DSA:2.120.10.80 | - | 63 | 324 | 9.6E-32 | IPR015915 |
| SMART | SM00612 | kelc_smart | 116 | 162 | 1.8E-8 | IPR006652 |
| SMART | SM00612 | kelc_smart | 163 | 214 | 3.7 | IPR006652 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G21950.1 | SKP1 interacting partner 6. Encodes an SKP1 interacting partner (SKIP6). | 0 |
| RefSeq | XP_017237595.1 | PREDICTED: F-box/kelch-repeat protein SKIP6 [Daucus carota subsp. sativus] | 0 |
| Q9SJ04 | F-box/kelch-repeat protein SKIP6 OS=Arabidopsis thaliana OX=3702 GN=SKIP6 PE=1 SV=1 | 0 | |
| TrEMBL | A0A166BPB6 | F-box/kelch-repeat protein SKIP6-like OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_011455 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 39.244652 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 26.239725 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 28.210325 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 29.317307 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 27.104889 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 34.402725 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 30.418186 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 33.117046 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 22.716961 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 21.136478 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 24.130144 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 31.403975 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 22.6248 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 26.524561 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 14.208301 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 16.971836 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 24.107752 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 14.94728 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 17.615053 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 13.142862 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 13.485731 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 17.898134 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 19.264893 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 19.757259 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 21.890572 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 24.124802 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 23.751755 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 24.483152 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 25.048843 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 9.326152 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 14.82429 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 14.909486 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 46.914116 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 27.239422 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 50.623611 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 21.053009 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 17.324762 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 16.426218 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 18.738977 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 11.29482 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 7.367708 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 9.53194 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 15.186937 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 44.58287 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 33.811005 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 11.037302 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 27.165312 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 11.624542 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 11.615672 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 13.467435 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg39461 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_8223 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah026775 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g139290 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg12836, Sbi_jg53052 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg8816 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl33328, Sgl38493, Sgl39613 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000000205, gene:ENSEOMG00000005629 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0019390, CQ.Regalona.r1.6BG0020430 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30043630, pistato.v30043670 |
| Apiaceae | Apium graveolens | 3 | Ag3G01261, Ag5G00013, Ag7G02266 |
| Arecaceae | Cocos nucifera | 1 | COCNU_02G007410 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103700899 |
| Asteraceae | Flaveria trinervia | 2 | Ftri6G10037, FtriNA23893 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G21950.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10000172m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g01030.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB01g022190.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G1813 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G1880 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno04g10120 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate06g08350 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.1976 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00014431 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G19785 |
| Poaceae | Echinochloa crus-galli | 2 | BH03.4370, CH07.145 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_7AG0581510, gene-QOZ80_7BG0612580 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0113310.1.CDS1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_038817 |
| Poaceae | Oryza coarctata | 1 | Oco14G016400 |
| Poaceae | Oryza sativa | 1 | LOC_Os07g47650.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G387100 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0305545 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr19G000480, Chr27G017100 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G240200 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG013390, gene_TRIDC2BG016300 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G111200.1.cds1, TraesCS2B02G130200.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb111340_P001 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g5768 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG07.297 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g23820 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_6_RagTag.1627 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-17552 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-9219 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-12152 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000011l.980 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00007333 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-22863 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-4453 |
| Salicaceae | Populus euphratica | 1 | populus_peu23020 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132614493 |
| Solanaceae | Solanum chilense | 1 | SOLCI001732700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107017893 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_341 |
| Tamaricaceae | Tamarix chinensis | 1 | TC04G1027 |
| Zosteraceae | Zostera marina | 1 | Zosma01g29830.v3.1 |