Basic Information
Locus ID:
Ag4G02886
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
A Receptor for Ubiquitination Targets
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 314809708 | 314812360 | - | Ag4G02886 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.07 | 22,417.69 Da | 49.38 | 84.56 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12937 | F-box-like | 15 | 58 | 6.0E-6 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 8 | 78 | 3.38E-12 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 1 | 79 | 1.1E-9 | - |
| ProSiteProfiles | PS50181 | F-box domain profile. | 9 | 56 | 10.239312 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 156 | 195 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 168 | 195 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 0 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 0 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 0 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 0 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 0 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 0 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 0 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 0 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 0 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 0 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 0 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 0 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 0.119645 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 0 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 0 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 0 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 0.302495 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 0 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 0 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 0 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 0 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 0 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 0 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 0.070259 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg1181, jg28587 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_26289 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah009249 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g222720 |
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg41456 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg27946 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00005044 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl55361, Sgl60708, Sgl61220 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000020018, gene:ENSEOMG00000039198 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7BG0000520, CQ.Regalona.r1.9AG0023940 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30103890, pistato.v30103900 |
| Apiaceae | Apium graveolens | 2 | Ag4G02886, Ag9G00234 |
| Arecaceae | Cocos nucifera | 2 | scaffold019274G000010, scaffold025043G000010 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103709865 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.2529.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri4G27921 |
| Brassicaceae | Arabidopsis thaliana | 3 | AT1G23770.1, AT1G23780.1, AT1G70360.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10009461m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g21160.v2.2, Sp7g01980.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB01g023520.2N, BniB03g019320.2N, BniB03g031030.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G0463 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno01g14850 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0224s00007.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g31080 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG08.638, evm.TU.LG08.745 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00007899, Pov_00030499 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G18688 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0239690, gene-QOZ80_3BG0288330 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0394690.1.CDS1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_069623, gene-QYE76_069624 |
| Poaceae | Oryza coarctata | 1 | Oco05G007280 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G430300 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr01G028450, Chr04G000890, Chr07G001010, Chr12G011010 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G407300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG009210, gene_TRIDC4BG041630 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G060300.1.cds1, TraesCS4B02G235800.1.cds1 ... |
| Poaceae | Zea mays | 5 | Zm00001eb009480_P001, Zm00001eb051260_P001 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-2399, nbis-gene-3998 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g1726, Zma_g4104 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG07.1870, evm.TU.LG15.1289 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g27570 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_1_RagTag.1997, evm.TU.Scaffold_2_RagTag.430 ... |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-28220, nbisL1-mrna-4764, nbisL1-mrna-5807 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-9422 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-3527 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000009l.255, add.evm.TU.utg000016l.113 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00004934, Maker00016240 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-18652 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-13940 |
| Salicaceae | Populus euphratica | 5 | populus_peu08877, populus_peu08878, populus_peu09703 ... |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132625930 |
| Solanaceae | Solanum chilense | 1 | SOLCI007494800 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107002974 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.14268_chr08_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC12G1883 |
| Zosteraceae | Zostera marina | 1 | Zosma01g27410.v3.1 |