halophFGD

Basic Information

Locus ID: Ag4G02833

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: f-box protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr4	312837302	312837881	-	Ag4G02833

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.73	19,316.08 Da	46.14	102.71	-0.25

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00646	F-box domain	47	84	1.6E-4	IPR001810
SUPERFAMILY	SSF81383	F-box domain	41	93	7.19E-11	IPR036047
Gene3D	G3DSA:1.20.1280.50	-	22	133	1.2E-8	-

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K14495 (F-box protein GID2)

Pathway:

ko04075 (Plant hormone signal transduction) map04075 (Plant hormone signal transduction)

Best hit

Source	Best Hit ID	Description
TAIR	AT4G24210.1	F-box family protein. F-box protein that is involved in GA signaling. Regulates seed germination. Component of E3 ubiquitin complex. Interacts with DELLA proteins.
RefSeq	XP_017244153.1	PREDICTED: F-box protein GID2 [Daucus carota subsp. sativus]
Swiss-Prot	Q9STX3	F-box protein GID2 OS=Arabidopsis thaliana OX=3702 GN=GID2 PE=1 SV=1
TrEMBL	A0A162AEW7	F-box domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_012798 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	0.2503	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	0.41346	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	0.763077	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	0.30181	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	0.398006	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	0.167389	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	0.143878	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	0.187724	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	9.09257	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	8.738912	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	9.534702	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	5.910368	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	7.866948	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	9.472306	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	1.368129	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	2.281413	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	3.404124	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	5.323366	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	8.978132	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	2.513518	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	3.595245	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	0.390579	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	0.885888	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	0.595217	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	1.753743	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	11.594496	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	13.995686	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	10.95119	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	7.268998	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	0		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	0		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	0.113723		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	0.577432		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	4.513859		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	0.244727		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	0.799031		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	0.611168		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	1.52057		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	0.977237	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	0.228607	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	1.878458	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	8.95163	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	7.592362	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	1.498027	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	0.353523	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	13.418427	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	0.398285	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	9.805194	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	12.359776	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	14.287107	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	1	jg22744
Aizoaceae	Mesembryanthemum crystallinum	1	gene_6086
Amaranthaceae	Atriplex hortensis	1	Ah005984
Amaranthaceae	Salicornia bigelovii	2	Sbi_jg16896, Sbi_jg61426
Amaranthaceae	Salicornia europaea	1	Seu_jg185
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00008267
Amaranthaceae	Suaeda glauca	2	Sgl24752, Sgl29900
Amaranthaceae	Chenopodium album	3	gene:ENSEOMG00000009276, gene:ENSEOMG00000028349 ... gene:ENSEOMG00000041005
Amaranthaceae	Chenopodium quinoa	2	CQ.Regalona.r1.4AG0009720, CQ.Regalona.r1.4BG0009940
Apiaceae	Apium graveolens	2	Ag3G00136, Ag4G02833
Arecaceae	Cocos nucifera	3	COCNU_01G011010, COCNU_11G007530, COCNU_11G007540
Arecaceae	Phoenix dactylifera	3	gene-LOC103714146, gene-LOC103718852, gene-LOC120111339
Asteraceae	Flaveria trinervia	4	Ftri10G29795, Ftri16G28571, Ftri18G10200, Ftri9G11094
Brassicaceae	Arabidopsis thaliana	1	AT4G24210.1
Brassicaceae	Eutrema salsugineum	2	Thhalv10000501m.g.v1.0, Thhalv10026481m.g.v1.0
Brassicaceae	Schrenkiella parvula	1	Sp7g22190.v2.2
Brassicaceae	Brassica nigra	1	BniB05g013000.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq03G1796, Ceq05G1368
Casuarinaceae	Casuarina glauca	2	Cgl03G1935, Cgl05G1373
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno05g06710
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate09g11500
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-1226
Nitrariaceae	Nitraria sibirica	1	evm.TU.LG06.382
Plumbaginaceae	Limonium bicolor	2	Lb3G21150, Lb6G30217
Poaceae	Echinochloa crus-galli	3	AH07.2353, BH06.2053, CH07.2234
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.3HG0228040.1.CDS1 ... HORVU.MOREX.r3.3HG0228120.1
Poaceae	Lolium multiflorum	1	gene-QYE76_023211
Poaceae	Oryza coarctata	1	Oco03G013570
Poaceae	Oryza sativa	1	LOC_Os02g30250.1
Poaceae	Paspalum vaginatum	2	gene-BS78_02G126000, gene-BS78_04G181800
Poaceae	Sporobolus alterniflorus	5	Chr06G009040, Chr09G013340, Chr13G009220, Chr15G010600 ... Chr26G000700
Poaceae	Thinopyrum elongatum	3	Tel3E01G104000, Tel3E01G104400, Tel3E01G104500
Poaceae	Triticum dicoccoides	3	gene_TRIDC3AG006460, gene_TRIDC3AG006490 ... gene_TRIDC3BG008960
Poaceae	Triticum aestivum	6	TraesCS3A02G055700.1.cds1, TraesCS3A02G056000.1 ... TraesCS3A02G511800.1, TraesCS3B02G068100.1.cds1, TraesCS3B02G068800.1, TraesCS3D02G056100.1
Poaceae	Zea mays	3	Zm00001eb121240_P001, Zm00001eb183250_P002 ... Zm00001eb245180_P001
Poaceae	Zoysia japonica	1	nbis-gene-29822
Poaceae	Zoysia macrostachya	2	Zma_g13763, Zma_g16556
Portulacaceae	Portulaca oleracea	2	evm.TU.LG03.683, evm.TU.LG12.1054
Posidoniaceae	Posidonia oceanica	3	gene.Posoc01g14210, gene.Posoc07g07430, gene.Posoc07g11080
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.44658.7, evm.TU.Scaffold_8_RagTag.1010
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-19218, nbisL1-mrna-8933
Rhizophoraceae	Ceriops tagal	1	nbisL1-mrna-917
Rhizophoraceae	Ceriops zippeliana	1	nbisL1-mrna-20705
Rhizophoraceae	Kandelia candel	2	add.evm.TU.utg000002l.240, add.evm.TU.utg000018l.130
Rhizophoraceae	Kandelia obovata	2	Maker00003535, Maker00010792
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-20058, nbisL1-mrna-20587
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-10044, nbisL1-mrna-24055
Salicaceae	Populus euphratica	1	populus_peu32020
Solanaceae	Lycium barbarum	1	gene-LOC132627813
Solanaceae	Solanum chilense	1	SOLCI002241800
Solanaceae	Solanum pennellii	1	gene-LOC107015670
Tamaricaceae	Reaumuria soongarica	1	gene_1759
Tamaricaceae	Tamarix chinensis	1	TC04G2592
Zosteraceae	Zostera marina	1	Zosma03g36780.v3.1