Basic Information
Locus ID:
Ag4G02784
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Gamma-tubulin complex is necessary for microtubule nucleation at the centrosome
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 310107753 | 310116701 | + | Ag4G02784 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.82 | 109,849.90 Da | 44.02 | 99.10 | -0.07 |
Protein Domain:
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80260.1 | Spc97 / Spc98 family of spindle pole body (SBP) component. | 0 |
| RefSeq | XP_017243242.1 | PREDICTED: gamma-tubulin complex component 5-like [Daucus carota subsp. sativus] | 0 |
| Q96RT8 | Gamma-tubulin complex component 5 OS=Homo sapiens OX=9606 GN=TUBGCP5 PE=1 SV=1 | 0 | |
| TrEMBL | A0A165ZH62 | Gamma-tubulin complex component OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_008784 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 8.733607 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 6.721014 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 6.991238 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 7.280119 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 7.776924 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 8.469705 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 7.702256 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 6.556166 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 17.840778 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 18.028162 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 17.475204 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 17.66943 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 15.628861 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 13.853916 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 4.427151 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 6.105044 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 6.684478 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 5.446923 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 7.014102 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 5.90174 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 4.746827 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 10.494598 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 11.114442 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 9.897172 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 8.015718 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 10.27874 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 7.6284 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 7.786743 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 8.442805 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 1.382013 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 2.898937 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 1.608933 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 2.358886 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 4.088193 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 2.513941 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 1.493444 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0.920101 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.801928 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 9.321202 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 4.398336 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 3.057166 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 3.470457 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 4.258276 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 6.01392 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 5.37971 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 3.723319 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 4.801113 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 15.927041 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 16.618502 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 13.080106 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg22802 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_7871 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah033631 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g037780 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg19647, Sbi_jg44531 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg17386 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00024054 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl63710, Sgl68212 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000017941, gene:ENSEOMG00000019887 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.2AG0009930, CQ.Regalona.r1.2BG0011830 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30045720 |
| Apiaceae | Apium graveolens | 1 | Ag4G02784 |
| Arecaceae | Cocos nucifera | 1 | COCNU_13G000520 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103711564 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.2198.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri2G31670 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G20570.1, AT1G80260.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10018067m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g35550.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB05g075930.2N, BniB06g051610.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G2315 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G2453 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g06810 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0035s00021.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g11110 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG06.479 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00010714 |
| Poaceae | Echinochloa crus-galli | 2 | AH05.3942, CH05.4231 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_5AG0396590 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.3HG0320590.1, HORVU.MOREX.r3.5HG0434250.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_000616 |
| Poaceae | Oryza coarctata | 1 | Oco03G011280 |
| Poaceae | Oryza sativa | 2 | LOC_Os02g32340.1, LOC_Os12g41290.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_08G131200 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0704237 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr04G018430, Chr06G019180, Chr19G008180, Chr19G008190 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G129000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG009230, gene_TRIDC5BG010890 |
| Poaceae | Triticum aestivum | 4 | TraesCS2D02G096700.1, TraesCS5A02G059900.2 ... |
| Poaceae | Zea mays | 1 | Zm00001eb327280_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-30485 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g26069 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG04.1448, evm.TU.LG05.1973 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g14260 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_16_RagTag.915 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-25100 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-18901 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-19276 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000022l.27 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00016048 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-25 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-10240 |
| Salicaceae | Populus euphratica | 1 | populus_peu26580 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132627910 |
| Solanaceae | Solanum chilense | 1 | SOLCI005181200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107018031 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_16546 |
| Tamaricaceae | Tamarix chinensis | 1 | TC07G0635 |
| Zosteraceae | Zostera marina | 1 | Zosma04g19690.v3.1 |