Basic Information
Locus ID:
Ag4G02783
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Mitogen-activated protein kinase kinase kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 310099888 | 310106768 | + | Ag4G02783 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.59 | 72,825.21 Da | 61.95 | 70.11 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 302 | 562 | 1.3E-68 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 299 | 650 | 2.46E-85 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 297 | 593 | 5.2E-83 | - |
| SMART | SM00220 | serkin_6 | 301 | 562 | 6.7E-96 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 301 | 562 | 51.38205 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 307 | 330 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 278 | 301 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 281 | 301 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 50 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 625 | 663 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 583 | 599 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 8 | 33 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 583 | 663 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G66850.2 | - | 0 |
| RefSeq | XP_017242557.1 | PREDICTED: mitogen-activated protein kinase kinase kinase YODA-like isoform X1 [Daucus carota subsp. sativus] | 0 |
| Q9C5H5 | Mitogen-activated protein kinase kinase kinase 5 OS=Arabidopsis thaliana OX=3702 GN=MAPKKK5 PE=1 SV=1 | 0 | |
| TrEMBL | A0A165ZH36 | Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_008783 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 12.143565 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 11.74844 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 9.23553 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 11.880874 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 11.008694 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 13.179661 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 8.481881 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 9.608926 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 25.364605 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 24.72732 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 24.730745 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 18.232138 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 20.267593 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 16.441345 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 5.602645 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 6.967104 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 5.532214 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 11.931695 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 8.691404 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 25.0408 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 23.512472 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 7.667501 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 7.058357 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 9.987427 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 10.033825 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 8.978426 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 7.836631 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 8.564668 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 9.528822 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 5.402036 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 8.701097 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 6.004578 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 25.212807 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 14.977262 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 34.064617 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 15.240211 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 5.823848 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 9.425469 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 7.702268 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 10.415591 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 7.464535 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 46.600956 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 27.321272 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 30.293186 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 26.129297 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 39.880081 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 18.760878 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 18.771847 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 22.742525 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 21.456497 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg11946, jg17463, jg22803, jg40067 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_23915 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah027373 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g134510 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg12972, Sbi_jg52895 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg8965 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00010262 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl33986, Sgl39381 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000000322, gene:ENSEOMG00000003387 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0024710, CQ.Regalona.r1.6BG0026130 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30045730 |
| Apiaceae | Apium graveolens | 2 | Ag3G00169, Ag4G02783 |
| Arecaceae | Cocos nucifera | 2 | COCNU_06G017510, COCNU_14G010470 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103709183, gene-LOC103709223 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_03.2192.V1.1, AsparagusV1_07.2940.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri18G13088, Ftri18G32930 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G66850.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10003724m.g.v1.0, Thhalv10015359m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g29810.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB04g000300.2N, BniB06g015160.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G1280 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl03G2454, Cgl05G1283 |
| Cymodoceaceae | Cymodocea nodosa | 3 | gene.Cymno01g15450, gene.Cymno09g07250, gene.Cymno11g03230 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate03g05030, gene.Thate06g13170 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-1289, nbisL1-mrna-6621 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG02.2188, evm.TU.LG06.480 |
| Plantaginaceae | Plantago ovata | 3 | Pov_00023968, Pov_00027665, Pov_00029301 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G05991 |
| Poaceae | Echinochloa crus-galli | 5 | AH01.10, AH03.106, CH01.604, CH03.159, Contig1201.1 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_3AG0214830, gene-QOZ80_3BG0259980 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0155570.1, HORVU.MOREX.r3.5HG0512750.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_010032, gene-QYE76_017042 |
| Poaceae | Oryza coarctata | 4 | Oco05G024400, Oco06G025320, Oco13G000660, Oco14G000710 |
| Poaceae | Oryza sativa | 2 | LOC_Os03g55560.1, LOC_Os07g02780.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_01G070400, gene-BS78_02G012200 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0107331, Pt_Chr0107368, Pt_Chr0303383 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr01G004390, Chr04G029280, Chr06G009870, Chr12G036680 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G635300 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC2AG037660, gene_TRIDC2BG040280 ... |
| Poaceae | Triticum aestivum | 4 | TraesCS2A02G264600.1, TraesCS2B02G277400.3 ... |
| Poaceae | Zea mays | 3 | Zm00001eb058410_P002, Zm00001eb117980_P001 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-35862 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g2718, Zma_g408, Zma_g4687 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG05.597, evm.TU.LG25.729 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc03g28660, gene.Posoc04g06290 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_3_RagTag.326, evm.TU.Scaffold_6_RagTag.1908 ... |
| Rhizophoraceae | Carallia pectinifolia | 4 | nbisL1-mrna-17232, nbisL1-mrna-566, nbisL1-mrna-651 ... |
| Rhizophoraceae | Ceriops tagal | 4 | nbisL1-mrna-11170, nbisL1-mrna-17122, nbisL1-mrna-4566 ... |
| Rhizophoraceae | Ceriops zippeliana | 4 | nbisL1-mrna-11878, nbisL1-mrna-20630, nbisL1-mrna-20631 ... |
| Rhizophoraceae | Kandelia candel | 3 | evm.TU.utg000011l.1163, evm.TU.utg000018l.283 ... |
| Rhizophoraceae | Kandelia obovata | 3 | Maker00003291, Maker00007682, Maker00012423 |
| Rhizophoraceae | Rhizophora apiculata | 3 | nbisL1-mrna-11443, nbisL1-mrna-15529, nbisL1-mrna-6454 |
| Rhizophoraceae | Rhizophora mangle | 3 | nbisL1-mrna-17130, nbisL1-mrna-2261, nbisL1-mrna-3183 |
| Salicaceae | Populus euphratica | 5 | populus_peu14318, populus_peu14326, populus_peu23430 ... |
| Solanaceae | Lycium barbarum | 4 | gene-LOC132604112, gene-LOC132622602, gene-LOC132623568 ... |
| Solanaceae | Solanum chilense | 4 | SOLCI003883400, SOLCI005181300, SOLCI006709300 ... |
| Solanaceae | Solanum pennellii | 4 | gene-LOC107005755, gene-LOC107011539, gene-LOC107011869 ... |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_2792 |
| Tamaricaceae | Tamarix chinensis | 1 | TC11G0502 |
| Zosteraceae | Zostera marina | 3 | Zosma01g00940.v3.1, Zosma06g07030.v3.1, Zosma06g07150.v3.1 |